ourMELONS/NAMESPACE

# Generated by roxygen2: do not edit by hand

export(convert_FASTA_to_BAPS)
export(greedyMix)
export(handleData)
export(importFile)
importFrom(R6,R6Class)
importFrom(Rsamtools,scanBam)
importFrom(adegenet,.readExt)
importFrom(adegenet,read.genepop)
importFrom(ape,as.DNAbin)
importFrom(ape,read.FASTA)
importFrom(matlab2r,blanks)
importFrom(matlab2r,cell)
importFrom(matlab2r,colon)
importFrom(matlab2r,disp)
importFrom(matlab2r,find)
importFrom(matlab2r,inputdlg)
importFrom(matlab2r,isempty)
importFrom(matlab2r,isfield)
importFrom(matlab2r,isspace)
importFrom(matlab2r,log2)
importFrom(matlab2r,max)
importFrom(matlab2r,min)
importFrom(matlab2r,nargin)
importFrom(matlab2r,ones)
importFrom(matlab2r,questdlg)
importFrom(matlab2r,rand)
importFrom(matlab2r,repmat)
importFrom(matlab2r,reshape)
importFrom(matlab2r,size)
importFrom(matlab2r,sortrows)
importFrom(matlab2r,squeeze)
importFrom(matlab2r,strcmp)
importFrom(matlab2r,times)
importFrom(matlab2r,uiputfile)
importFrom(matlab2r,zeros)
importFrom(methods,is)
importFrom(stats,rgamma)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(utils,read.delim)
importFrom(utils,read.table)
importFrom(vcfR,read.vcfR)
importFrom(zeallot,"%<-%")
Added essential R package structure 2019-12-12 14:03:04 +01:00			`# Generated by roxygen2: do not edit by hand`

Added function to convert from FASTA to BAPS (#24) 2024-08-09 13:19:35 +02:00			`export(convert_FASTA_to_BAPS)`
Added bare-bones greedyMix 2020-05-20 15:34:40 +02:00			`export(greedyMix)`
Fixed basic parsing of FASTA files (#25) 2023-09-11 12:15:30 +02:00			`export(handleData)`
Exporting importFile() 2023-09-11 12:51:41 +02:00			`export(importFile)`
Refactored `laskeMuutokset4()` as an R6 method 2022-08-25 12:54:55 +02:00			`importFrom(R6,R6Class)`
Dependency fixes 2021-09-03 12:56:00 +02:00			`importFrom(Rsamtools,scanBam)`
Adding adegenet to imports 2022-01-27 11:19:10 +01:00			`importFrom(adegenet,.readExt)`
			`importFrom(adegenet,read.genepop)`
Minor changes for clean check 2021-08-23 14:34:20 +02:00			`importFrom(ape,as.DNAbin)`
			`importFrom(ape,read.FASTA)`
Removed docs from matlab2r files (#21) 2022-02-03 10:10:36 +01:00			`importFrom(matlab2r,blanks)`
			`importFrom(matlab2r,cell)`
			`importFrom(matlab2r,colon)`
Translated `checkLogml()` (#3) 2022-09-15 13:02:32 +02:00			`importFrom(matlab2r,disp)`
Resolved conflicts involving homonymous functions 2022-02-03 10:43:34 +01:00			`importFrom(matlab2r,find)`
Removed docs from matlab2r files (#21) 2022-02-03 10:10:36 +01:00			`importFrom(matlab2r,inputdlg)`
			`importFrom(matlab2r,isempty)`
			`importFrom(matlab2r,isfield)`
			`importFrom(matlab2r,isspace)`
Adding matlab2r::log2 to NAMESPACE Checks will continue to fail until matlab2r::log2() is on CRAN. In the meantime, one could use the function from the development version: install_github("ocbe-uio/matlab2r") 2022-12-23 14:46:41 +01:00			`importFrom(matlab2r,log2)`
Removed docs from matlab2r files (#21) 2022-02-03 10:10:36 +01:00			`importFrom(matlab2r,max)`
			`importFrom(matlab2r,min)`
Translated minimum_spanning_tree() (#3) 2022-12-23 10:45:50 +01:00			`importFrom(matlab2r,nargin)`
Removed docs from matlab2r files (#21) 2022-02-03 10:10:36 +01:00			`importFrom(matlab2r,ones)`
Translated findOutRowsFromInd (#2) Importing one more function from matlab2r 2022-02-08 11:16:57 +01:00			`importFrom(matlab2r,questdlg)`
Removed docs from matlab2r files (#21) 2022-02-03 10:10:36 +01:00			`importFrom(matlab2r,rand)`
			`importFrom(matlab2r,repmat)`
			`importFrom(matlab2r,reshape)`
			`importFrom(matlab2r,size)`
			`importFrom(matlab2r,sortrows)`
			`importFrom(matlab2r,squeeze)`
			`importFrom(matlab2r,strcmp)`
			`importFrom(matlab2r,times)`
Syntax fixes, added documentation 2022-07-19 14:34:08 +02:00			`importFrom(matlab2r,uiputfile)`
Removed docs from matlab2r files (#21) 2022-02-03 10:10:36 +01:00			`importFrom(matlab2r,zeros)`
Minor changes for clean build 2020-03-18 15:02:38 +01:00			`importFrom(methods,is)`
Replaced `randga()` with `rgamma()` (closes #9) 2025-01-15 11:07:44 +01:00			`importFrom(stats,rgamma)`
Added rand function 2019-12-17 15:34:47 +01:00			`importFrom(stats,runif)`
Minor changes for clean check 2021-08-23 14:34:20 +02:00			`importFrom(stats,sd)`
Updated documentation 2020-06-24 12:12:10 +02:00			`importFrom(utils,read.delim)`
Updated documentation (#24) 2024-04-08 13:29:03 +02:00			`importFrom(utils,read.table)`
Fixed dependencies 2021-09-03 11:17:00 +02:00			`importFrom(vcfR,read.vcfR)`
Translated findCliques() + subfunctions 2022-12-22 08:29:50 +01:00			`importFrom(zeallot,"%<-%")`