62 lines
1.8 KiB
Mathematica
62 lines
1.8 KiB
Mathematica
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function viewUnrooted(action)
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% VIEWUNROOTED function to called by VIEWNJ to draw unrooted
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% neighbor-joining trees
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handle = gcf;
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h0 = findobj(handle,'Tag','attr_menu');
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g = get(h0,'Userdata');
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g.visualtype = action;
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set(h0,'Userdata',g); % store in the attribute menu
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cla reset
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axis off
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% close(g.handle);
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% h0 = figure('NumberTitle','off');
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% g.handle = h0;
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% set(h0,'menubar','none','toolbar','figure');
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% set(h0,'Tag','nj_plot');
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% set(h0,'Name',['Neighbor-Joining tree - ' g.filename]);;
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if strcmp(g.type,'NJ')
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t = seqNeighJoin(g.D, 'equivar', g.varnames);
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else
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t = seqlinkage(g.D, 'average', g.varnames);
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end
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switch action
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case 'radial'
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% plotNJ(g.D, 1, char(g.varnames));
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Plot(t,'type','radial');
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case 'phylogram'
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% plotNJ(g.D, 0, char(g.varnames));
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plotPhytree(t);
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end
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% h1 = uimenu('Parent',handle, ...
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% 'Label','Attributes', ...
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% 'Tag','attr_menu');
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% h2 = uimenu('Parent',h1, ...
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% 'Label','Rename clusters', ...
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% 'callback', 'plotflow rename', ...
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% 'Tag','clustername_menu');
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% h2 = uimenu('Parent',h1, ...
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% 'Label','Visual type', ...
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% 'Tag','visualtype_menu');
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% h3 = uimenu('Parent',h2, ...
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% 'Label','Square', ...
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% 'callback', 'viewDendrogram(''square'')', ...
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% 'Tag','viewsquare_menu');
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% h3 = uimenu('Parent',h2, ...
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% 'Label','Angular', ...
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% 'callback', 'viewDendrogram(''angular'')', ...
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% 'Tag','viewangular_menu');
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% h3 = uimenu('Parent',h2, ...
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% 'Label','Radial', ...
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% 'callback', 'viewUnrooted(''radial'')', ...
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% 'Tag','viewradial_menu');
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% h3 = uimenu('Parent',h2, ...
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% 'Label','Phylogram', ...
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% 'callback', 'viewUnrooted(''phylogram'')', ...
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% 'Tag','viewphylogram_menu');
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% set(h1,'Userdata',g); % store in the attribute menu
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