103 lines
3.2 KiB
Mathematica
103 lines
3.2 KiB
Mathematica
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function viewPartition2(osuudet, popnames, npops, partition, filename)
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% Kuin viewParition.m, mutta toimii itsen<EFBFBD>isesti. Ei siis tarvitse
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% globaalia COUNTS-muuttujaa.
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%global COUNTS;
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%npops = size(COUNTS, 3);
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nind = size(osuudet,1);
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disp(['Number of admixed populations: ' num2str(npops)]);
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if npops>30
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disp(' ');
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disp('Figure can be drawn only if the number of populations');
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disp('is less or equal to 30.');
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disp(' ');
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return;
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end
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varit = giveColors(npops);
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korkeinviiva = 1.05;
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pieninarvo = -korkeinviiva;
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h0 = figure;
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set(h0, 'NumberTitle', 'off'); %image_figure; %Muutettu
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set(h0,'Tag','admixture_result');
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set(h0,'Name',['Admixture Result - ' filename]);
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tiedot.popnames = popnames;
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tiedot.info = osuudet;
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set(h0,'UserData',tiedot);
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set(gca, 'Xlim', [-.5 ,nind+.5], 'YLim', [pieninarvo ,korkeinviiva], ...
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'XTick', [], 'XTickLabel', [], 'YTick', [], 'YTickLabel', []);
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for i=1:nind
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if any(osuudet(i,:)>0)
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cumOsuudet = cumsum(osuudet(i,:));
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% Pylv<EFBFBD><EFBFBD>n piirt<EFBFBD>minen
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for j=1:npops
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if j==1
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if cumOsuudet(1)>0
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h0 =patch([i-1, i, i, i-1], [0, 0, cumOsuudet(1), cumOsuudet(1)], varit(j,:));
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set(h0,'EdgeColor','none'); % Midevaa varten kommentoitava!
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end
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else
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if (cumOsuudet(j)>cumOsuudet(j-1))
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h0 = patch([i-1, i, i, i-1], [cumOsuudet(j-1), cumOsuudet(j-1), ...
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cumOsuudet(j), cumOsuudet(j)], varit(j,:));
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set(h0,'EdgeColor','none'); % Midevaa varten kommentoitava!
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end
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end
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end
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end
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end
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if ~isempty(popnames)
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npops = size(popnames,1);
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for i=1:npops
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firstInd = popnames{i,2};
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if size(popnames,1)~=nind
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line([firstInd-1, firstInd-1], [0,1], 'Color', 'k'); %Populaatioiden rajat
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end
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% The determination of x_paikka is changed, since popnames could be
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% non-sequential. - Jing
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if i<npops
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x_paikka = popnames{i,2}-1+(popnames{i+1,2}-popnames{i,2})/2;
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else
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x_paikka = popnames{i,2}-1+(nind+1-popnames{i,2})/2;
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end
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korkeuskerroin = pieninarvo / -0.2;
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suhdekerroin = npops/6;
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for letter_num = 1:length(popnames{i,1}{1}) %
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letter= popnames{i,1}{1}(letter_num);%alter .004|
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text(x_paikka+korjaus(letter)*suhdekerroin, ...
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0.0005*korkeuskerroin-0.02*letter_num*korkeuskerroin, ...
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letter, 'Interpreter','none');
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end
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end
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line([nind,nind],[0,1],'Color','k');
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end
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%-------------------------------------------------------------------------------------
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function extra = korjaus(letter)
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if any(letter == 'ijlI')
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extra = 0.022;
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elseif any(letter == 'r')
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extra = 0.016;
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elseif any(letter == 'k')
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extra = 0.009;
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elseif any(letter == 'f')
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extra = 0.013;
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elseif any(letter == 't')
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extra = 0.014;
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elseif any(letter == 'w')
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extra = -0.003;
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else
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extra = 0;
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end;
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