2020-06-24 11:48:23 +02:00
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context("Opening files on greedyMix")
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2021-02-01 09:23:45 +01:00
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# TODO: needs #12 to be fixed before this can be done without user intervention
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greedyMix(
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2021-02-26 10:01:01 +01:00
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tietue = "inst/ext/ExamplesDataFormatting/Example data in BAPS format for clustering of diploid individuals.txt",
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2021-03-30 08:23:07 +02:00
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format = "BAPS",
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2021-02-01 09:23:45 +01:00
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savePreProcessed = FALSE
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) # Upper bounds 100 100
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2020-07-31 13:59:30 +02:00
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context("Linkage")
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test_that("Linkages are properly calculated", {
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Y <- c(0.5, 0.3, 0.6, 0.3, 0.3, 0.2, 0.3, 0.3, 0.3, 0.5)
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expect_equal(
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object = linkage(Y),
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expected = matrix(c(2, 1, 7, 8, 4, 3, 5, 6, .2, .3, .3, .6), ncol=3)
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)
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})
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