Improved README and TODO
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@ -9,6 +9,10 @@ rBAPS is currently under development and a stable version is yet to be released.
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remotes::install_github("ocbe-uio/rBAPS", "dev")
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```
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## Contributing
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rBAPS is Open Software licenced under the [GPL-3](https://tldrlegal.com/license/gnu-general-public-license-v3-(gpl-3)), so all contributions are welcome. You can find a list of todos and pitfalls on the [TODO.md](TODO.md) file.
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## References
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### Scientific papers
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13
TODO.md
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TODO.md
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@ -1,3 +1,5 @@
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# Minimum requirements for next stable release
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For the first stable release of rBAPS, the following features should be implemented:
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- [ ] Clustering of populations (import `greedyPoPMix.m` from BAPS)
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@ -7,3 +9,14 @@ For the first stable release of rBAPS, the following features should be implemen
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- [ ] Admixture analysis (import `admix1.m` from BAPS)
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Note to contributors: as tasks get finished, please update this file with an `x` and keep it there. This should help us fill out a changelog for an eventual stable release.
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# Known pitfalls
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The following behavioral differences have been detected between the Matlab functions and their R counterparts. In order to save time, these differences will not be addressed, since they could require extensive reworking of a function. However, such differences may very well cause unexpected problems in some situations, which is why compiling this list is so important. The list below might provide a good starting point for identifying and fixing bugs:
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## `ownNum2Str`
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Argument | Value | Matlab output | R output
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---------|-------|---------------|---------
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`number` | `'NaN` | `'NAN'` | error
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`number` | `<vector>` | `'<vector elements>'` | `'<vector elements>'` + warning
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