Fixes to documentation

NAMESPACE

@@ -8,6 +8,7 @@ export(computeIndLogml)
 export(computePersonalAllFreqs)
 export(computeRows)
 export(etsiParas)
+export(isfield)
 export(laskeMuutokset4)
 export(learn_simple_partition)
 export(ownNum2Str)
@@ -20,6 +21,7 @@ export(simulateAllFreqs)
 export(simulateIndividuals)
 export(simuloiAlleeli)
 export(size)
+export(strcmp)
 export(suoritaMuutos)
 export(times)
 importFrom(stats,runif)

R/poistaLiianPienet.R

@@ -10,9 +10,8 @@
 #' @param SUMCOUNTS SUMCOUNTS
 #' @export
 poistaLiianPienet <- function (npops, rowsFromInd, alaraja,
-    PARTITION = matrix(NA, 0, 0), COUNTS = matrix(NA, 0, 0),
-    SUMCOUNTS = NA) {
-
+        PARTITION = matrix(NA, 0, 0), COUNTS = matrix(NA, 0, 0),
+        SUMCOUNTS = NA) {
     popSize <- zeros(1,npops)
     if (npops > 0) {
         for (i in 1:npops) {

man/admix1.Rd

@@ -4,14 +4,22 @@
 \alias{admix1}
 \title{Admixture analysis}
 \usage{
-admix1(tietue)
+admix1(
+  tietue,
+  PARTITION = matrix(NA, 0, 0),
+  COUNTS = matrix(NA, 0, 0),
+  SUMCOUNTS = NA
+)
 }
 \arguments{
-\item{tietue}{record}
+\item{tietue}{a named record list}
 }
 \description{
 Admixture analysis
 }
 \details{
-If the record == -1, the mixture results file is loaded. Otherwise, will the required variables be retrieved from the record fields?
+If the record == -1, the mixture results file is loaded. Otherwise,
+will the required variables be retrieved from the record fields?
+`tietue`should contain the following elements: PARTITION, COUNTS, SUMCOUNTS,
+alleleCodes, adjprior, popnames, rowsFromInd, data, npops, noalle
 }