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Merge branch 'moving-datasets' into fix-writeMixtureInfo

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Waldir Leoncio 2020-10-19 08:30:26 +02:00
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.Rbuildignore
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@ -4,4 +4,4 @@ matlab
CHANGELOG.md
CITATION.cff
.travis.yml
data/ExamplesDataFormatting
inst/ext/ExamplesDataFormatting

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data/ExamplesDataFormatting/Example MLST DNA sequence data in concatenated Excel format.xls → inst/ext/ExamplesDataFormatting/Example MLST DNA sequence data in concatenated Excel format.xls
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data/ExamplesDataFormatting/Example baseline data in GENEPOP format for Trained clustering.txt → inst/ext/ExamplesDataFormatting/Example baseline data in GENEPOP format for Trained clustering.txt
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data/ExamplesDataFormatting/Example coordinates for the spatial clustering of DNA sequences.txt → inst/ext/ExamplesDataFormatting/Example coordinates for the spatial clustering of DNA sequences.txt
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data/ExamplesDataFormatting/Example coordinates for the spatial clustering.txt → inst/ext/ExamplesDataFormatting/Example coordinates for the spatial clustering.txt
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data/ExamplesDataFormatting/Example data in BAPS format for clustering of diploid individuals.txt → inst/ext/ExamplesDataFormatting/Example data in BAPS format for clustering of diploid individuals.txt
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data/ExamplesDataFormatting/Example data in BAPS format for clustering of haploid individuals.txt → inst/ext/ExamplesDataFormatting/Example data in BAPS format for clustering of haploid individuals.txt
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data/ExamplesDataFormatting/Example data in BAPS format for clustering of tetraploid individuals.txt → inst/ext/ExamplesDataFormatting/Example data in BAPS format for clustering of tetraploid individuals.txt
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data/ExamplesDataFormatting/Example data in BAPS format for group-wise clustering of diploid individuals.txt → inst/ext/ExamplesDataFormatting/Example data in BAPS format for group-wise clustering of diploid individuals.txt
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data/ExamplesDataFormatting/Example data in BAPS format for group-wise clustering of haploid individuals.txt → inst/ext/ExamplesDataFormatting/Example data in BAPS format for group-wise clustering of haploid individuals.txt
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data/ExamplesDataFormatting/Example data in BAPS format for group-wise clustering of tetraploid individuals.txt → inst/ext/ExamplesDataFormatting/Example data in BAPS format for group-wise clustering of tetraploid individuals.txt
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data/ExamplesDataFormatting/Example data in FASTA format for clustering of haploid individuals.fasta → inst/ext/ExamplesDataFormatting/Example data in FASTA format for clustering of haploid individuals.fasta
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data/ExamplesDataFormatting/Example of a BAPS formatted diploid sequence file for clustering with linked loci.txt → inst/ext/ExamplesDataFormatting/Example of a BAPS formatted diploid sequence file for clustering with linked loci.txt
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data/ExamplesDataFormatting/Example of a BAPS formatted haploid sequence file for clustering with linked loci.txt → inst/ext/ExamplesDataFormatting/Example of a BAPS formatted haploid sequence file for clustering with linked loci.txt
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data/ExamplesDataFormatting/Example of a BAPS formatted tetraploid sequence file for clustering with linked loci.txt → inst/ext/ExamplesDataFormatting/Example of a BAPS formatted tetraploid sequence file for clustering with linked loci.txt
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data/ExamplesDataFormatting/Example of a fasta formatted sequence file for gene recA.txt → inst/ext/ExamplesDataFormatting/Example of a fasta formatted sequence file for gene recA.txt
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data/ExamplesDataFormatting/Example of a file specifying gene boundaries for a concatenated sequence in BAPS format.txt → inst/ext/ExamplesDataFormatting/Example of a file specifying gene boundaries for a concatenated sequence in BAPS format.txt
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data/ExamplesDataFormatting/Example of a partition file for admixture analysis based on user-specified populations.txt → inst/ext/ExamplesDataFormatting/Example of a partition file for admixture analysis based on user-specified populations.txt
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data/ExamplesDataFormatting/Example of an MLST profile file for 6 genes.txt → inst/ext/ExamplesDataFormatting/Example of an MLST profile file for 6 genes.txt
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data/ExamplesDataFormatting/Example of hierBAPS input in FASTA format.fa → inst/ext/ExamplesDataFormatting/Example of hierBAPS input in FASTA format.fa
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data/ExamplesDataFormatting/Example of hierBAPS input in XLS format.xls → inst/ext/ExamplesDataFormatting/Example of hierBAPS input in XLS format.xls
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data/ExamplesDataFormatting/Example of sample population index file to be used with BAPS formatted data.txt → inst/ext/ExamplesDataFormatting/Example of sample population index file to be used with BAPS formatted data.txt
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data/ExamplesDataFormatting/Example of sample population names file to be used with BAPS formatted data.txt → inst/ext/ExamplesDataFormatting/Example of sample population names file to be used with BAPS formatted data.txt
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data/ExamplesDataFormatting/Example pre-grouped sample data in GENEPOP format for Trained clustering.txt → inst/ext/ExamplesDataFormatting/Example pre-grouped sample data in GENEPOP format for Trained clustering.txt
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data/ExamplesDataFormatting/Example sample data in GENEPOP format for Trained clustering.txt → inst/ext/ExamplesDataFormatting/Example sample data in GENEPOP format for Trained clustering.txt
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data/ExamplesDataFormatting/Example test data in XLS format for Trained clustering.xls → inst/ext/ExamplesDataFormatting/Example test data in XLS format for Trained clustering.xls
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data/ExamplesDataFormatting/Example training data in XLS format for Trained clustering.xls → inst/ext/ExamplesDataFormatting/Example training data in XLS format for Trained clustering.xls
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data/ExamplesDataFormatting/Notes.md → inst/ext/ExamplesDataFormatting/Notes.md
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