diff --git a/R/greedyMix.R b/R/greedyMix.R index 8b79573..9c12cbf 100644 --- a/R/greedyMix.R +++ b/R/greedyMix.R @@ -9,12 +9,12 @@ greedyMix <- function(data, format) { out <- load_fasta(data) } else if (format == "vcf") { stop("VCF files not yet supported." ) - # TODO #16: implement load_vcf() + # TODO #17: implement load_vcf() } else if (format == "sam") { stop("SAM files not yet supported." ) - # TODO #16: implement load_sam() + # TODO #18: implement load_sam() } else if(format == "genepop") { - # TODO #16: implement load_genepop() + # TODO #19: implement load_genepop() stop("GenePop files not yet supported." ) } else { stop("Format not supported.") diff --git a/tests/testthat/test-greedyMix.R b/tests/testthat/test-greedyMix.R index dde5e54..71f1ccd 100644 --- a/tests/testthat/test-greedyMix.R +++ b/tests/testthat/test-greedyMix.R @@ -41,9 +41,9 @@ df_fasta <- greedyMix( data = paste(path_inst, "FASTA_clustering_haploid.fasta", sep="/"), format ="fasta" ) -# TODO: add example reading VCF -# TODO: add example reading SAM -# TODO: add example reading Genpop +# TODO #17: add example reading VCF +# TODO #18: add example reading SAM +# TODO #19: add example reading Genpop test_that("Files are imported correctly", { expect_equal(dim(df_fasta), c(5, 99)) })