Translated laskemuutokset{1-5}() (#3)
This commit is contained in:
Waldir Leoncio
parent
ea0a5fb344
commit
46dc08905a
2 changed files with 392 additions and 1 deletions
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@ -13,7 +13,266 @@ spatialMixture_muutokset <- R6Class(
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laskeMuutokset = function(
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laskeMuutokset = function(
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ind, rowsFromInd, data, adjprior, priorTerm, logml, cliques, separators
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ind, rowsFromInd, data, adjprior, priorTerm, logml, cliques, separators
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) {
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) {
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stop("Not yet implemented") # TODO: implement
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# Palauttaa npops * 1 taulun, jossa i:s alkio kertoo, mik?olisi
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# muutos logml:ss? mikהli yksil?ind siirretההn koriin i.
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# diffInCounts on poistettava COUNTS:in siivusta i1 ja lisהttהv?
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# COUNTS:in siivuun i2, mikהli muutos toteutetaan.
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npops <- size(COUNTS, 3)
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muutokset <- zeros(npops, 1)
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emptyPop_pops <- findEmptyPop(npops)
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emptyPop <- emptyPop_pops$emptyPop
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pops <- emptyPop_pops$pops
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rm(emptyPop_pops)
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i1 <- PARTITION(ind)
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i2 <- pops[find(pops != i1)]
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if (emptyPop > 0) {
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i2 <- c(i2, emptyPop)
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}
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rows <- ((ind - 1) * rowsFromInd + 1):(ind * rowsFromInd)
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diffInCounts <- computeDiffInCounts(rows, size(COUNTS, 1), size(COUNTS, 2), data)
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diffInSumCounts <- sum(diffInCounts)
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diffInCliqCounts <- computeDiffInCliqCounts(cliques, ind)
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diffInSepCounts <- computeDiffInCliqCounts(separators, ind)
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COUNTS[, ,i1] <- COUNTS[, , i1] - diffInCounts
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SUMCOUNTS[i1, ] <- SUMCOUNTS[i1, ] - diffInSumCounts
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CLIQCOUNTS[, i1] <- CLIQCOUNTS[, i1] - diffInCliqCounts
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SEPCOUNTS[, i1] <- SEPCOUNTS[, i1] - diffInSepCounts
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for (i in i2) {
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CLIQCOUNTS[, i] <- CLIQCOUNTS[, i] + diffInCliqCounts
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SEPCOUNTS[, i] <- SEPCOUNTS[, i] + diffInSepCounts
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COUNTS[, ,i] <- COUNTS[, , i] + diffInCounts
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SUMCOUNTS[i, ] <- SUMCOUNTS[i, ] + diffInSumCounts
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muutokset[i] <- computeLogml(adjprior, priorTerm) - logml
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CLIQCOUNTS[, i] <- CLIQCOUNTS[, i] - diffInCliqCounts
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SEPCOUNTS[, i] <- SEPCOUNTS[, i] - diffInSepCounts
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COUNTS[, , i] <- COUNTS[, , i] - diffInCounts
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SUMCOUNTS[i, ] <- SUMCOUNTS[i, ] - diffInSumCounts
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}
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COUNTS[, , i1] <- COUNTS[, , i1] + diffInCounts
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SUMCOUNTS[i1, ] <- SUMCOUNTS[i1, ] + diffInSumCounts
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CLIQCOUNTS[, i1] <- CLIQCOUNTS[, i1] + diffInCliqCounts
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SEPCOUNTS[, i1] <- SEPCOUNTS[, i1] + diffInSepCounts
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# Asetetaan muillekin tyhjille populaatioille sama muutos, kuin
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# emptyPop:lle
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if (emptyPop > 0) {
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empties <- mysetdiff(1:npops, c(i2, i1))
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muutokset[empties] <- muutokset(emptyPop)
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}
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return(list(muutokset = muutokset, diffInCounts = diffInCounts))
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},
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#' @param i1 i1
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#' @param rowsFromInd rowsFromInd
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#' @param data data
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#' @param adjprior adjprior
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#' @param priorTerm priorTerm
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#' @param logml logml
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#' @param cliques cliques
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#' @param separators separators
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laskeMuutokset2 = function(
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i1, rowsFromInd, data, adjprior, priorTerm, logml, cliques, separators
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) {
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# Palauttaa npops * 1 taulun, jossa i:s alkio kertoo, mik?olisi
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# muutos logml:ss? mikהli korin i1 kaikki yksilצt siirretההn
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# koriin i.
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# Laskee muutokset vain yhdelle tyhjהlle populaatiolle, muille tulee
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# muutokseksi 0.
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# global COUNTS # global SUMCOUNTS
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# global PARTITION # global POP_LOGML
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# global CLIQCOUNTS # global SEPCOUNTS
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npops <- size(COUNTS, 3)
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muutokset <- zeros(npops, 1)
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emptyPop <- findEmptyPop(npops)$emptyPop
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pops <- findEmptyPop(npops)$npops
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i2 <- pops[find(pops != i1)]
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if (emptyPop > 0) {
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i2 <- c(i2, emptyPop)
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}
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inds <- find(PARTITION == i1)
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rows <- computeRows(rowsFromInd, inds, length(inds))
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diffInCounts <- computeDiffInCounts(rows, size(COUNTS, 1), size(COUNTS, 2), data)
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diffInSumCounts <- sum(diffInCounts)
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diffInCliqCounts <- computeDiffInCliqCounts(cliques, inds)
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diffInSepCounts <- computeDiffInCliqCounts(separators, inds)
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COUNTS[, ,i1] <- COUNTS[, , i1] - diffInCounts
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SUMCOUNTS[i1, ] <- SUMCOUNTS[i1, ] - diffInSumCounts
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CLIQCOUNTS[, i1] <- 0
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SEPCOUNTS[, i1] <- 0
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for (i in i2) {
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CLIQCOUNTS[, i] <- CLIQCOUNTS[, i] + diffInCliqCounts
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SEPCOUNTS[, i] <- SEPCOUNTS[, i] + diffInSepCounts
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COUNTS[, ,i] <- COUNTS[, , i] + diffInCounts
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SUMCOUNTS[i, ] <- SUMCOUNTS[i, ] + diffInSumCounts
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muutokset[i] <- computeLogml(adjprior, priorTerm) - logml
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CLIQCOUNTS[, i] <- CLIQCOUNTS[, i] - diffInCliqCounts
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SEPCOUNTS[, i] <- SEPCOUNTS[, i] - diffInSepCounts
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COUNTS[, ,i] <- COUNTS[, , i] - diffInCounts
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SUMCOUNTS[i, ] <- SUMCOUNTS[i, ] - diffInSumCounts
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}
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COUNTS[, ,i1] <- COUNTS[, , i1] + diffInCounts
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SUMCOUNTS[i1, ] <- SUMCOUNTS[i1, ] + diffInSumCounts
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CLIQCOUNTS[, i1] <- diffInCliqCounts
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SEPCOUNTS[, i1] <- diffInSepCounts
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return(list(muutokset = muutokset, diffInCounts = diffInCounts))
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},
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#' @param T2 T2
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#' @param inds2 inds2
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#' @param rowsFromInd rowsFromInd
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#' @param data data
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#' @param adjprior adjprior
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#' @param priorTerm priorTerm
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#' @param i1 i1
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#' @param logml logml
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#' @param cliques cliques
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#' @param separators separators
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laskeMuutokset3 = function(
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T2, inds2, rowsFromInd, data, adjprior, priorTerm, i1, logml, cliques,
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separators
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) {
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# Palauttaa length(unique(T2)) * npops taulun, jossa (i, j):s alkio
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# kertoo, mik?olisi muutos logml:ss? jos populaation i1 osapopulaatio
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# inds2(find(T2 == i)) siirretההn koriin j.
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# Laskee vain yhden tyhjהn populaation, muita kohden muutokseksi jהה 0.
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# global COUNTS # global SUMCOUNTS
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# global PARTITION # global POP_LOGML
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# global CLIQCOUNTS # global SEPCOUNTS
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npops <- size(COUNTS, 3)
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npops2 <- length(unique(T2))
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muutokset <- zeros(npops2, npops)
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for (pop2 in 1:npops2) {
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inds <- inds2[find(T2 == pop2)]
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ninds <- length(inds)
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if (ninds > 0) {
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rows <- computeRows(rowsFromInd, inds, ninds)
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diffInCounts <- computeDiffInCounts(rows, size(COUNTS, 1), size(COUNTS, 2), data)
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diffInSumCounts <- sum(diffInCounts)
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diffInCliqCounts <- computeDiffInCliqCounts(cliques, inds)
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diffInSepCounts <- computeDiffInCliqCounts(separators, inds)
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COUNTS[, ,i1] <- COUNTS[, , i1] - diffInCounts
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SUMCOUNTS[i1, ] <- SUMCOUNTS[i1, ] - diffInSumCounts
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CLIQCOUNTS[, i1] <- CLIQCOUNTS[, i1] - diffInCliqCounts
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SEPCOUNTS[, i1] <- SEPCOUNTS[, i1] - diffInSepCounts
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emptyPop <- findEmptyPop(npops)$emptyPop
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pops <- findEmptyPop(npops)$pops
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i2 <- pops[find(pops != i1)]
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if (emptyPop > 0) {
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i2 <- c(i2, emptyPop)
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}
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for (i in i2) {
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CLIQCOUNTS[, i] <- CLIQCOUNTS[, i] + diffInCliqCounts
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SEPCOUNTS[, i] <- SEPCOUNTS[, i] + diffInSepCounts
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COUNTS[, ,i] <- COUNTS[, , i] + diffInCounts
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SUMCOUNTS[i, ] <- SUMCOUNTS[i, ] + diffInSumCounts
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muutokset[pop2, i] <- computeLogml(adjprior, priorTerm) - logml
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CLIQCOUNTS[, i] <- CLIQCOUNTS[, i] - diffInCliqCounts
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SEPCOUNTS[, i] <- SEPCOUNTS[, i] - diffInSepCounts
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COUNTS[, ,i] <- COUNTS[, , i] - diffInCounts
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SUMCOUNTS[i, ] <- SUMCOUNTS[i, ] - diffInSumCounts
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}
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COUNTS[, ,i1] <- COUNTS[, , i1] + diffInCounts
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SUMCOUNTS[i1, ] <- SUMCOUNTS[i1, ] + diffInSumCounts
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CLIQCOUNTS[, i1] <- CLIQCOUNTS[, i1] + diffInCliqCounts
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SEPCOUNTS[, i1] <- SEPCOUNTS[, i1] + diffInSepCounts
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}
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}
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return(muutokset)
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},
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#' @param inds inds
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#' @param rowsFromInd rowsFromInd
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#' @param data data
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#' @param adjprior adjprior
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#' @param priorTerm priorTerm
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#' @param logml logml
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#' @param cliques cliques
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#' @param separators separators
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#' @param i1 i1
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#' @param i2 i2
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laskeMuutokset5 = function(
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inds, rowsFromInd, data, adjprior, priorTerm, logml, cliques, separators,
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i1, i2
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) {
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# Palauttaa length(inds) * 1 taulun, jossa i:s alkio kertoo, mik?olisi
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# muutos logml:ss? mikהli yksil?i vaihtaisi koria i1:n ja i2:n vהlill?
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# global COUNTS # global SUMCOUNTS
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# global PARTITION
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# global CLIQCOUNTS # global SEPCOUNTS
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ninds <- length(inds)
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muutokset <- zeros(ninds, 1)
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cliqsize <- size(CLIQCOUNTS, 2)
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sepsize <- size(SEPCOUNTS, 2)
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for (i in 1:ninds) {
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ind <- inds[i]
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if (PARTITION[ind] == i1) {
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pop1 <- i1 # mist?
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pop2 <- i2 # mihin
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} else {
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pop1 <- i2
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pop2 <- i1
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}
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rows <- ((ind - 1) * rowsFromInd + 1):(ind * rowsFromInd)
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diffInCounts <- computeDiffInCounts(rows, size(COUNTS, 1), size(COUNTS, 2), data)
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diffInSumCounts <- sum(diffInCounts)
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diffInCliqCounts <- computeDiffInCliqCounts(cliques, ind)
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diffInSepCounts <- computeDiffInCliqCounts(separators, ind)
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COUNTS[, ,pop1] <- COUNTS[, , pop1] - diffInCounts
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SUMCOUNTS[pop1, ] <- SUMCOUNTS[pop1, ] - diffInSumCounts
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COUNTS[, ,pop2] <- COUNTS[, , pop2] + diffInCounts
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SUMCOUNTS[pop2, ] <- SUMCOUNTS[pop2, ] + diffInSumCounts
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CLIQCOUNTS[, pop1] <- CLIQCOUNTS[, pop1] - diffInCliqCounts
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CLIQCOUNTS[, pop2] <- CLIQCOUNTS[, pop2] + diffInCliqCounts
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SEPCOUNTS[, pop1] <- SEPCOUNTS[, pop1] - diffInSepCounts
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SEPCOUNTS[, pop2] <- SEPCOUNTS[, pop2] + diffInSepCounts
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muutokset[i] <- computeLogml(adjprior, priorTerm) - logml
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COUNTS[, ,pop1] <- COUNTS[, , pop1] + diffInCounts
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SUMCOUNTS[pop1, ] <- SUMCOUNTS[pop1, ] + diffInSumCounts
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COUNTS[, ,pop2] <- COUNTS[, , pop2] - diffInCounts
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SUMCOUNTS[pop2, ] <- SUMCOUNTS[pop2, ] - diffInSumCounts
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CLIQCOUNTS[, pop1] <- CLIQCOUNTS[, pop1] + diffInCliqCounts
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CLIQCOUNTS[, pop2] <- CLIQCOUNTS[, pop2] - diffInCliqCounts
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SEPCOUNTS[, pop1] <- SEPCOUNTS[, pop1] + diffInSepCounts
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SEPCOUNTS[, pop2] <- SEPCOUNTS[, pop2] - diffInSepCounts
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}
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return(muutokset)
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}
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}
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)
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)
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)
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)
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@ -12,6 +12,9 @@ Calculate changes (spatial mixture class)
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\subsection{Public methods}{
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\subsection{Public methods}{
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\itemize{
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\itemize{
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\item \href{#method-spatialMixture_muutokset-laskeMuutokset}{\code{spatialMixture_muutokset$laskeMuutokset()}}
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\item \href{#method-spatialMixture_muutokset-laskeMuutokset}{\code{spatialMixture_muutokset$laskeMuutokset()}}
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\item \href{#method-spatialMixture_muutokset-laskeMuutokset2}{\code{spatialMixture_muutokset$laskeMuutokset2()}}
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\item \href{#method-spatialMixture_muutokset-laskeMuutokset3}{\code{spatialMixture_muutokset$laskeMuutokset3()}}
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\item \href{#method-spatialMixture_muutokset-laskeMuutokset5}{\code{spatialMixture_muutokset$laskeMuutokset5()}}
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\item \href{#method-spatialMixture_muutokset-clone}{\code{spatialMixture_muutokset$clone()}}
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\item \href{#method-spatialMixture_muutokset-clone}{\code{spatialMixture_muutokset$clone()}}
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}
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}
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}
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}
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@ -55,6 +58,135 @@ Calculate changes (spatial mixture class)
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}
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}
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}
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}
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\if{html}{\out{<hr>}}
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\if{html}{\out{<hr>}}
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\if{html}{\out{<a id="method-spatialMixture_muutokset-laskeMuutokset2"></a>}}
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\if{latex}{\out{\hypertarget{method-spatialMixture_muutokset-laskeMuutokset2}{}}}
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\subsection{Method \code{laskeMuutokset2()}}{
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\subsection{Usage}{
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\if{html}{\out{<div class="r">}}\preformatted{spatialMixture_muutokset$laskeMuutokset2(
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i1,
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rowsFromInd,
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data,
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adjprior,
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priorTerm,
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logml,
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cliques,
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separators
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)}\if{html}{\out{</div>}}
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}
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\subsection{Arguments}{
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\if{html}{\out{<div class="arguments">}}
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\describe{
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\item{\code{i1}}{i1}
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\item{\code{rowsFromInd}}{rowsFromInd}
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\item{\code{data}}{data}
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\item{\code{adjprior}}{adjprior}
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\item{\code{priorTerm}}{priorTerm}
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\item{\code{logml}}{logml}
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\item{\code{cliques}}{cliques}
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\item{\code{separators}}{separators}
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}
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\if{html}{\out{</div>}}
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}
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}
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\if{html}{\out{<hr>}}
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\if{html}{\out{<a id="method-spatialMixture_muutokset-laskeMuutokset3"></a>}}
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\if{latex}{\out{\hypertarget{method-spatialMixture_muutokset-laskeMuutokset3}{}}}
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\subsection{Method \code{laskeMuutokset3()}}{
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\subsection{Usage}{
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\if{html}{\out{<div class="r">}}\preformatted{spatialMixture_muutokset$laskeMuutokset3(
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|
T2,
|
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|
inds2,
|
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|
rowsFromInd,
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|
data,
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||||||
|
adjprior,
|
||||||
|
priorTerm,
|
||||||
|
i1,
|
||||||
|
logml,
|
||||||
|
cliques,
|
||||||
|
separators
|
||||||
|
)}\if{html}{\out{</div>}}
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||||||
|
}
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|
|
||||||
|
\subsection{Arguments}{
|
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|
\if{html}{\out{<div class="arguments">}}
|
||||||
|
\describe{
|
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|
\item{\code{T2}}{T2}
|
||||||
|
|
||||||
|
\item{\code{inds2}}{inds2}
|
||||||
|
|
||||||
|
\item{\code{rowsFromInd}}{rowsFromInd}
|
||||||
|
|
||||||
|
\item{\code{data}}{data}
|
||||||
|
|
||||||
|
\item{\code{adjprior}}{adjprior}
|
||||||
|
|
||||||
|
\item{\code{priorTerm}}{priorTerm}
|
||||||
|
|
||||||
|
\item{\code{i1}}{i1}
|
||||||
|
|
||||||
|
\item{\code{logml}}{logml}
|
||||||
|
|
||||||
|
\item{\code{cliques}}{cliques}
|
||||||
|
|
||||||
|
\item{\code{separators}}{separators}
|
||||||
|
}
|
||||||
|
\if{html}{\out{</div>}}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
\if{html}{\out{<hr>}}
|
||||||
|
\if{html}{\out{<a id="method-spatialMixture_muutokset-laskeMuutokset5"></a>}}
|
||||||
|
\if{latex}{\out{\hypertarget{method-spatialMixture_muutokset-laskeMuutokset5}{}}}
|
||||||
|
\subsection{Method \code{laskeMuutokset5()}}{
|
||||||
|
\subsection{Usage}{
|
||||||
|
\if{html}{\out{<div class="r">}}\preformatted{spatialMixture_muutokset$laskeMuutokset5(
|
||||||
|
inds,
|
||||||
|
rowsFromInd,
|
||||||
|
data,
|
||||||
|
adjprior,
|
||||||
|
priorTerm,
|
||||||
|
logml,
|
||||||
|
cliques,
|
||||||
|
separators,
|
||||||
|
i1,
|
||||||
|
i2
|
||||||
|
)}\if{html}{\out{</div>}}
|
||||||
|
}
|
||||||
|
|
||||||
|
\subsection{Arguments}{
|
||||||
|
\if{html}{\out{<div class="arguments">}}
|
||||||
|
\describe{
|
||||||
|
\item{\code{inds}}{inds}
|
||||||
|
|
||||||
|
\item{\code{rowsFromInd}}{rowsFromInd}
|
||||||
|
|
||||||
|
\item{\code{data}}{data}
|
||||||
|
|
||||||
|
\item{\code{adjprior}}{adjprior}
|
||||||
|
|
||||||
|
\item{\code{priorTerm}}{priorTerm}
|
||||||
|
|
||||||
|
\item{\code{logml}}{logml}
|
||||||
|
|
||||||
|
\item{\code{cliques}}{cliques}
|
||||||
|
|
||||||
|
\item{\code{separators}}{separators}
|
||||||
|
|
||||||
|
\item{\code{i1}}{i1}
|
||||||
|
|
||||||
|
\item{\code{i2}}{i2}
|
||||||
|
}
|
||||||
|
\if{html}{\out{</div>}}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
\if{html}{\out{<hr>}}
|
||||||
\if{html}{\out{<a id="method-spatialMixture_muutokset-clone"></a>}}
|
\if{html}{\out{<a id="method-spatialMixture_muutokset-clone"></a>}}
|
||||||
\if{latex}{\out{\hypertarget{method-spatialMixture_muutokset-clone}{}}}
|
\if{latex}{\out{\hypertarget{method-spatialMixture_muutokset-clone}{}}}
|
||||||
\subsection{Method \code{clone()}}{
|
\subsection{Method \code{clone()}}{
|
||||||
|
|
|
||||||
Loading…
Add table
Reference in a new issue