Fixed documentation for clean build

.Rbuildignore

@@ -2,4 +2,5 @@ LICENSE
 TODO.md
 matlab
 CHANGELOG.md
-CITATION.cff
+CITATION.cff
+.travis.yml

R/poistaLiianPienet.R

@@ -5,6 +5,9 @@
 #' @param npops npops
 #' @param rowsFromInd rowsFromInd
 #' @param alaraja alaraja
+#' @param PARTITION PARTITION
+#' @param COUNTS COUNTS
+#' @param SUMCOUNTS SUMCOUNTS
 #' @export
 poistaLiianPienet <- function (npops, rowsFromInd, alaraja,
     PARTITION = matrix(NA, 0, 0), COUNTS = matrix(NA, 0, 0),

R/simulateIndividuals.R

@@ -1,6 +1,11 @@
 #' @title Simulate individuals
 #' @description simulate n individuals from population pop, such that
-#' proportion "missing_level" of the alleles are present. 
+#' proportion "missing_level" of the alleles are present.
+#' @param n n
+#' @param rowsFromInd rowsFromInd
+#' @param allfreqs allfreqs
+#' @param pop pop
+#' @param missing_level missing_level
 #' @export
 
 simulateIndividuals <- function(n, rowsFromInd, allfreqs, pop, missing_level) {

R/simuloiAlleeli.R

@@ -1,6 +1,9 @@
 #' @title simuloiAlleeli
 #' @description Simuloi populaation pop lokukseen loc alleelin.
 #' @note This function is (only?) called by `simulateIndividuals()`. Therefore, exporting it is probably unnecessary.
+#' @param allfreqs allfreqa
+#' @param pop pop
+#' @param loc loc
 #' @export
 
 simuloiAlleeli <- function(allfreqs, pop, loc) {
@@ -18,7 +21,7 @@ simuloiAlleeli <- function(allfreqs, pop, loc) {
     #     allfreqs[, loc],
     #     allfreqs[, loc, pop]
     # )
-    
+
 
     cumsumma <- cumsum(freqs)
     arvo <- runif(1)

man/poistaLiianPienet.Rd

@@ -19,6 +19,12 @@ poistaLiianPienet(
 \item{rowsFromInd}{rowsFromInd}
 
 \item{alaraja}{alaraja}
+
+\item{PARTITION}{PARTITION}
+
+\item{COUNTS}{COUNTS}
+
+\item{SUMCOUNTS}{SUMCOUNTS}
 }
 \description{
 Muokkaa tulokset muotoon, jossa outlier yksilöt on poistettu.

man/simulateIndividuals.Rd

@@ -6,6 +6,17 @@
 \usage{
 simulateIndividuals(n, rowsFromInd, allfreqs, pop, missing_level)
 }
+\arguments{
+\item{n}{n}
+
+\item{rowsFromInd}{rowsFromInd}
+
+\item{allfreqs}{allfreqs}
+
+\item{pop}{pop}
+
+\item{missing_level}{missing_level}
+}
 \description{
 simulate n individuals from population pop, such that
 proportion "missing_level" of the alleles are present.

man/simuloiAlleeli.Rd

@@ -6,6 +6,13 @@
 \usage{
 simuloiAlleeli(allfreqs, pop, loc)
 }
+\arguments{
+\item{allfreqs}{allfreqa}
+
+\item{pop}{pop}
+
+\item{loc}{loc}
+}
 \description{
 Simuloi populaation pop lokukseen loc alleelin.
 }