From 6e08c35f13fda353e348600496418b02a2ac646c Mon Sep 17 00:00:00 2001
From: Waldir Leoncio <w.l.netto@medisin.uio.no>
Date: Wed, 7 Aug 2024 11:42:29 +0200
Subject: [PATCH] Unwrapped `greedyMix() example (#24)

---
 DESCRIPTION      | 2 +-
 R/greedyMix.R    | 4 +---
 man/greedyMix.Rd | 4 +---
 3 files changed, 3 insertions(+), 7 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index a2e2c03..ab7405e 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -36,7 +36,7 @@ Description: Partial R implementation of the BAPS software
 License: GPL-3
 BugReports: https://github.com/ocbe-uio/rBAPS/issues
 Encoding: UTF-8
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 Suggests:
     testthat (>= 2.1.0)
 Imports:
diff --git a/R/greedyMix.R b/R/greedyMix.R
index 3bff02b..9a9bc20 100644
--- a/R/greedyMix.R
+++ b/R/greedyMix.R
@@ -19,10 +19,8 @@
 #' with high-throughput sequencing data. <http://www.htslib.org/>
 #' @export
 #' @examples
-#' \dontrun{ # TEMP: unwrap once #24 is resolved
-#' data <- system.file("extdata", "BAPS_format_clustering_diploid.txt", package = "rBAPS")
+#' data <- system.file("extdata", "BAPS_clustering_diploid.txt", package = "rBAPS")
 #' greedyMix(data, "baps")
-#' } # TEMP: unwrap once #24 is resolved
 greedyMix <- function(
   data, format = gsub("^.*\\.", "", data), partitionCompare = NULL, npops = 3L,
   counts = NULL, sumcounts = NULL, max_iter = 100L, alleleCodes = NULL,
diff --git a/man/greedyMix.Rd b/man/greedyMix.Rd
index 2d1a0e4..5974165 100644
--- a/man/greedyMix.Rd
+++ b/man/greedyMix.Rd
@@ -48,10 +48,8 @@ greedyMix(
 Clustering of individuals
 }
 \examples{
-\dontrun{ # TEMP: unwrap once #24 is resolved
-data <- system.file("extdata", "BAPS_format_clustering_diploid.txt", package = "rBAPS")
+data <- system.file("extdata", "BAPS_clustering_diploid.txt", package = "rBAPS")
 greedyMix(data, "baps")
-} # TEMP: unwrap once #24 is resolved
 }
 \references{
 Samtools: a suite of programs for interacting