From e7bf9f7b8532fd39c30e7afe97be9b3dbd0a39fb Mon Sep 17 00:00:00 2001 From: Waldir Leoncio Date: Fri, 3 Sep 2021 13:14:39 +0200 Subject: [PATCH] Adding BiocManager to CI Explicitly installing Bioc dependency. This inelegance should be fixed ASAP. --- .github/workflows/r.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/workflows/r.yml b/.github/workflows/r.yml index af97a33..3f112ec 100644 --- a/.github/workflows/r.yml +++ b/.github/workflows/r.yml @@ -78,8 +78,9 @@ jobs: # Installing package dependencies ------------------------ # - name: Installing package dependencies run: | + remotes::install_cran(c("rcmdcheck", "BiocManager")) + BiocManager::install("Rsamtools") remotes::install_deps(dependencies = TRUE) - remotes::install_cran("rcmdcheck") shell: Rscript {0} # Checking package --------------------------------------- #