From 8b44947ecb5e3f8c4adea6512b6cf4ab2569d679 Mon Sep 17 00:00:00 2001
From: Waldir Leoncio <w.l.netto@medisin.uio.no>
Date: Fri, 3 Sep 2021 11:17:00 +0200
Subject: [PATCH] Fixed dependencies

---
 DESCRIPTION      | 3 +--
 NAMESPACE        | 1 +
 R/greedyMix.R    | 1 +
 man/greedyMix.Rd | 4 +++-
 4 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 95b18a4..7bfff51 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -41,5 +41,4 @@ RoxygenNote: 7.1.1
 Suggests:
     testthat (>= 2.1.0)
 Imports:
-    methods,
-    ape
+    methods, ape, vcfR
diff --git a/NAMESPACE b/NAMESPACE
index b26f046..8bb2029 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -57,3 +57,4 @@ importFrom(stats,runif)
 importFrom(stats,sd)
 importFrom(utils,read.delim)
 importFrom(utils,write.table)
+importFrom(vcfR,read.vcfR)
diff --git a/R/greedyMix.R b/R/greedyMix.R
index 75e7bc2..cbd32b3 100644
--- a/R/greedyMix.R
+++ b/R/greedyMix.R
@@ -3,6 +3,7 @@
 #' @param format Format of the data c("FASTA", "VCF" ,"SAM", or "GenePop")
 #' @param verbose if \code{TRUE}, prints extra output information
 #' @importFrom utils read.delim
+#' @importFrom vcfR read.vcfR
 #' @export
 greedyMix <- function(data, format, verbose = TRUE) {
 	format <- tolower(format)
diff --git a/man/greedyMix.Rd b/man/greedyMix.Rd
index 7117437..3d5fc15 100644
--- a/man/greedyMix.Rd
+++ b/man/greedyMix.Rd
@@ -4,12 +4,14 @@
 \alias{greedyMix}
 \title{Clustering of individuals}
 \usage{
-greedyMix(data, format)
+greedyMix(data, format, verbose = TRUE)
 }
 \arguments{
 \item{data}{data file}
 
 \item{format}{Format of the data c("FASTA", "VCF" ,"SAM", or "GenePop")}
+
+\item{verbose}{if \code{TRUE}, prints extra output information}
 }
 \description{
 Clustering of individuals