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Added numeric output option to load_fasta() (#25)

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This commit is contained in:
Waldir Leoncio 2023-08-11 11:01:20 +02:00
parent a51816d5c0
commit 95d9d658cb
2 changed files with 15 additions and 7 deletions
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4
man/load_fasta.Rd
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@ -4,12 +4,12 @@
\alias{load_fasta}
\title{load_fasta}
\usage{
load_fasta(msa, keep.singletons = FALSE)
load_fasta(msa, keep_singletons = FALSE, output_numbers = TRUE)
}
\arguments{
\item{msa}{Either the location of a fasta file or ape DNAbin object containing the multiple sequence alignment data to be clustered}
\item{keep.singletons}{A logical indicating whether to consider singleton mutations in calculating the clusters}
\item{keep_singletons}{A logical indicating whether to consider singleton mutations in calculating the clusters}
}
\value{
A character matrix with filtered SNP data