Added source Matlab code for reference

matlab/ExampleData/spatial clustering of groups/Example coordinates for the spatial clustering.txt

@@ -0,0 +1,3 @@
+  3.1013610e+006  6.7104850e+006
+  3.1016310e+006  6.7101990e+006
+  3.1015790e+006  6.7101790e+006

matlab/ExampleData/spatial clustering of groups/Example data in BAPS format for group-wise clustering of diploid individuals.txt

@@ -0,0 +1,10 @@
+-9 102 56 80 100 90 118 90 88 104 1
+-9 102 54 82 102 92 116 90 86 104 1
+88 104 56 84 102 -9 120 90 88 100 1
+86 102 56 80 102 -9 116 90 86 100 1
+88 102 54 80 102 90 116 92 -9 100 2
+88 102 56 80 100 90 118 90 -9 104 2
+80 102 54 82 102 92 116 90 86 104 2
+88 104 56 84 102 92 120 90 88 100 2
+86 102 56 80 -9 90 116 90 86 100 3
+88 102 54 80 -9 90 116 92 86 100 3

matlab/ExampleData/spatial clustering of groups/Example data in BAPS format for group-wise clustering of haploid individuals.txt

@@ -0,0 +1,5 @@
+88 102 56 80 100 90 118 -9 88 104 1
+80 102 54 82 102 92 116 90 86 104 1
+88 104 56 84 102 -9 120 90 88 100 2
+86 102 56 80 102 90 116 90 86 100 2
+88 102 -9 80 102 90 116 92 86 100 3

matlab/ExampleData/spatial clustering of groups/Example data in BAPS format for group-wise clustering of tetraploid individuals.txt

@@ -0,0 +1,20 @@
+88 102 56 80 100 90 118 90 88 104 1
+80 102 54 82 102 92 116 90 86 104 1
+88 102 56 80 100 90 118 90 88 104 1
+80 102 54 82 102 92 116 90 86 104 1
+88 -9 56 84 102 92 120 90 88 100 1
+86 -9 56 80 102 90 116 90 86 102 1
+88 -9 56 84 102 92 120 90 88 100 1
+86 -9 56 80 102 90 116 90 86 100 1
+88 102 54 82 102 90 116 92 86 102 2
+88 102 56 80 100 90 118 90 88 104 2
+88 102 54 80 102 90 116 92 86 102 2
+88 102 56 80 100 90 118 90 88 104 2
+80 102 54 82 102 92 116 -9 86 104 2
+88 104 56 84 102 92 120 -9 88 100 2
+80 102 54 82 102 92 116 -9 86 104 2
+88 104 56 84 102 92 120 -9 88 100 2
+86 102 56 80 102 90 116 90 86 100 3
+88 104 54 80 102 90 116 92 86 100 3
+86 102 56 80 104 90 116 90 86 100 3
+88 102 54 80 102 90 116 92 86 100 3

matlab/ExampleData/spatial clustering of groups/Example data in FASTA format for group-wise clustering of haploid individuals.fasta

@@ -0,0 +1,20 @@
+>1
+AACGAAACGATCGCGTCACCGGAACGTTGTCCGTCTCGAATAGCACTGTGGGAACGTGTTTTACATTCGT
+TAGTAACATGGTCAGCTGCTCATCCGTATT
+
+>2
+ATCAGCAAACGAGAAGTTGCAGAGGTCTTTGGTTTGAGCATTGCCCCCATACAATCGACTTCTGGCCTGG
+AATGCACCACAAACATACCCCACAGGCTCG
+
+>3
+GCTTTTACTAAGGCCTATCGGATTCAACGTCACTAAGACTCGGCACTAACAGGCCGTTGTAAGCCGCTCT
+GTCTGAGTATGGATGGTGGAGGCGGAGCCG
+
+>4
+ACCTGGACCTCTGTATTAACGGCTGTGATTCTGAGGGGGGTATCGCAGCGCACTTTCTAGCTATATCACG
+CAAGGATAAAGTTCACCCATCACGTTGACC
+
+>5
+ACAATACGTCATCCACACCGCGCCTATGGAAGAATTTGCCCTTTCGGCGACAGCCCATGCTGTCAAGGAG
+GTAACATAGCTACCAGGTCCCATTCCAGGA
+

matlab/ExampleData/spatial clustering of groups/group names.txt

@@ -0,0 +1,3 @@
+group_A
+groupB
+C

matlab/ExampleData/spatial clustering of groups/group partition for FASTA-format.txt

@@ -0,0 +1,5 @@
+1
+1
+2
+2
+3