max/ourMELONS
1
0
Fork 0
Code Issues 1 Pull requests Projects Releases Packages Wiki Activity Actions

Added source Matlab code for reference

Browse source
This commit is contained in:
Waldir Leoncio 2019-12-16 16:47:21 +01:00
parent b8af977117
commit b5d99903d2
186 changed files with 61405 additions and 1 deletions
Download patch file Download diff file Expand all files Collapse all files

31
matlab/linkage/encodealn.m Normal file
View file

@ -0,0 +1,31 @@
function [aln2] = encodealn(aln)
%ENCODEALN - Convert nucleotide in alignment to integer.
%
% Syntax: [aln2] = encodealn(aln)
%
% Inputs:
% aln - Alignment structure letter representation
%
% Outputs:
% aln2 - Alignment structure integer representation
%
%
% See also: CODONISESEQ, ENCODESEQ
% Molecular Biology & Evolution Toolbox, (C) 2005
% Author: James J. Cai
% Email: jamescai@hkusua.hku.hk
% Website: http://web.hku.hk/~jamescai/
% Last revision: 5/28/2005
if ~(aln.seqtype) error('Do not know the type of sequence! ... BAPS'); end
aln2=aln;
switch (aln2.seqtype)
case (1)
aln2.seq = i_encode_n(aln2.seq);
case (2)
aln2.seq = i_encode_n(aln2.seq);
case (3)
aln2.seq = i_encode_a(aln2.seq);
end