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Added source Matlab code for reference

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Waldir Leoncio 2019-12-16 16:47:21 +01:00
parent b8af977117
commit b5d99903d2
186 changed files with 61405 additions and 1 deletions
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47
matlab/linkage/selectSeqType.m Normal file
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function nextstep = selectSeqType()
items(1).name = 'SEQUENCE TYPE:';
items(1).default = 1;
items(1).linked = [2 3 4];
items(1).values = [];
items(2).name = '1 = Non-coding nucleotide';
items(2).default = 0;
items(2).exclusive = [3 4];
items(2).indent = 1;
items(3).name = '2 = Coding nucleotide';
items(3).default = 1;
items(3).exclusive = [2 4];
items(3).indent = 1;
items(4).name = '3 = Protein';
items(4).default = 0;
items(4).exclusive = [2 3];
items(4).indent = 1;
items(5).name = 'GENETIC CODE: ';
items(5).default = 1;
items(5).indent = 0;
items(5).values = {'1 - Standard';'2 - Vertebrate Mithchondrial'; ...
'3 - Yeast Mithchondrial';'4 - Mold Mithchondrial'; ...
'5 - Invertebrate Mithchondrial';'6 - Protozoan Mithchondrial'; ...
'7 - Coelenterate Mithchondrial';'8 - Mycoplasma'};
items(5).help = 'Please select a genetic code';
title = 'Sequence type and genetic code';
% msg = sprintf(['Please select sequence type and genetic code']);
out = CSEFlagDialog(items, title);
if ~(isempty(out)),
if(out(2).answer==1)
seqtype=1;
elseif(out(3).answer==1)
seqtype=2;
elseif(out(4).answer==1)
seqtype=3;
end
geneticcode=out(5).answer;
else
seqtype=[];
geneticcode=[];
end