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Added source Matlab code for reference

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Waldir Leoncio 2019-12-16 16:47:21 +01:00
parent b8af977117
commit b5d99903d2
186 changed files with 61405 additions and 1 deletions
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matlab/spatial/private/calcLogmlChanges.m Normal file
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function changes = calcLogmlChanges(inds, cqData, nCqCodes, spData, nSpCodes, locCliques, locSeparators, logml)
% compute the logml change if the given inds are moved to another cluster
% the input inds are supposed to come from the same cluster
% changes is a npops*1 vector
% Lu Cheng, 15.12.2012
global CQ_COUNTS; global SUM_CQ_COUNTS;
global SP_COUNTS; global SUM_SP_COUNTS;
global PARTITION;
global LOC_CQ_COUNTS;
global LOC_SP_COUNTS;
npops = size(CQ_COUNTS,3);
changes = zeros(npops,1);
indsToBeMoved = inds;
if isempty(indsToBeMoved), return, end
i1 = PARTITION(indsToBeMoved(1));
[diffCqCounts diffCqSumCounts]= computeDiffInCounts(indsToBeMoved, cqData, nCqCodes);
[diffSpCounts diffSpSumCounts]= computeDiffInCounts(indsToBeMoved, spData, nSpCodes);
diffLocCqCounts = computeDiffInCliqCounts(locCliques, indsToBeMoved);
diffLocSpCounts = computeDiffInCliqCounts(locSeparators, indsToBeMoved);
CQ_COUNTS(:,:,i1) = CQ_COUNTS(:,:,i1) - diffCqCounts;
SP_COUNTS(:,:,i1) = SP_COUNTS(:,:,i1) - diffSpCounts;
SUM_CQ_COUNTS(:,i1) = SUM_CQ_COUNTS(:,i1) - diffCqSumCounts;
SUM_SP_COUNTS(:,i1) = SUM_SP_COUNTS(:,i1) - diffSpSumCounts;
LOC_CQ_COUNTS(:,i1) = LOC_CQ_COUNTS(:,i1) - diffLocCqCounts;
LOC_SP_COUNTS(:,i1) = LOC_SP_COUNTS(:,i1) - diffLocSpCounts;
% PARTITION(inds) = -1;
updateLogmlTable(i1);
for i2 = 1:npops
if i2 ~= i1
CQ_COUNTS(:,:,i2) = CQ_COUNTS(:,:,i2) + diffCqCounts;
SP_COUNTS(:,:,i2) = SP_COUNTS(:,:,i2) + diffSpCounts;
SUM_CQ_COUNTS(:,i2) = SUM_CQ_COUNTS(:,i2) + diffCqSumCounts;
SUM_SP_COUNTS(:,i2) = SUM_SP_COUNTS(:,i2) + diffSpSumCounts;
LOC_CQ_COUNTS(:,i2) = LOC_CQ_COUNTS(:,i2) + diffLocCqCounts;
LOC_SP_COUNTS(:,i2) = LOC_SP_COUNTS(:,i2) + diffLocSpCounts;
% PARTITION(inds) = i2;
updateLogmlTable(i2);
logml_new = computeTotalLogml();
changes(i2) = logml_new - logml;
CQ_COUNTS(:,:,i2) = CQ_COUNTS(:,:,i2) - diffCqCounts;
SUM_CQ_COUNTS(:,i2) = SUM_CQ_COUNTS(:,i2) - diffCqSumCounts;
SP_COUNTS(:,:,i2) = SP_COUNTS(:,:,i2) - diffSpCounts;
SUM_SP_COUNTS(:,i2) = SUM_SP_COUNTS(:,i2) - diffSpSumCounts;
LOC_CQ_COUNTS(:,i2) = LOC_CQ_COUNTS(:,i2) - diffLocCqCounts;
LOC_SP_COUNTS(:,i2) = LOC_SP_COUNTS(:,i2) - diffLocSpCounts;
% PARTITION(inds) = -1;
updateLogmlTable(i2);
end
end
CQ_COUNTS(:,:,i1) = CQ_COUNTS(:,:,i1) + diffCqCounts;
SUM_CQ_COUNTS(:,i1) = SUM_CQ_COUNTS(:,i1) + diffCqSumCounts;
SP_COUNTS(:,:,i1) = SP_COUNTS(:,:,i1) + diffSpCounts;
SUM_SP_COUNTS(:,i1) = SUM_SP_COUNTS(:,i1) + diffSpSumCounts;
LOC_CQ_COUNTS(:,i1) = LOC_CQ_COUNTS(:,i1) + diffLocCqCounts;
LOC_SP_COUNTS(:,i1) = LOC_SP_COUNTS(:,i1) + diffLocSpCounts;
% PARTITION(inds) = i1;
updateLogmlTable(i1);
%---------------------------------------------------------------------