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Added source Matlab code for reference

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Waldir Leoncio 2019-12-16 16:47:21 +01:00
parent b8af977117
commit b5d99903d2
186 changed files with 61405 additions and 1 deletions
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17
matlab/spatial/private/initialCounts2.m Normal file
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function [sumcounts, counts] = initialCounts2(partition, data, npops, nLetters)
% initialize counts and sumcounts for the initial partition
% npops: number of populations in the partition
% nLetters: the maximum number of different symbols over all loci
% Lu Cheng, 25.05.2011
[nSeq nLoci] = size(data);
counts = zeros(nLetters,nLoci,npops);
sumcounts = zeros(nLoci,npops);
for i=1:npops
inds = (partition==i);
counts(:,:,i) = histc(data(inds,:),1:nLetters,1);
sumcounts(:,i) = sum(counts(:,:,i),1);
end