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Added source Matlab code for reference

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Waldir Leoncio 2019-12-16 16:47:21 +01:00
parent b8af977117
commit b5d99903d2
186 changed files with 61405 additions and 1 deletions
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83
matlab/spatial/private/update_join_difference.m Normal file
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function update_join_difference(cqData, nCqCodes, spData, nSpCodes, locCliques, locSeparators, logml)
% update JOIN_DIFFERENCE
% Lu Cheng, 15.12.2012
global CQ_COUNTS; global SUM_CQ_COUNTS;
global SP_COUNTS; global SUM_SP_COUNTS;
global PARTITION;
global JOIN_DIFFERENCE;
global LOC_CQ_COUNTS;
global LOC_SP_COUNTS;
npops = size(CQ_COUNTS,3);
for i1 = 1:npops-1
indsToBeMoved = find(PARTITION==i1);
if isempty(indsToBeMoved)
% Cluster i1 is empty
JOIN_DIFFERENCE(i1,(i1+1):npops) = 0;
JOIN_DIFFERENCE((i1+1):npops,i1) = 0;
else
[diffCqCounts diffCqSumCounts] = computeDiffInCounts(indsToBeMoved, cqData, nCqCodes);
[diffSpCounts diffSpSumCounts] = computeDiffInCounts(indsToBeMoved, spData, nSpCodes);
diffLocCqCounts = computeDiffInCliqCounts(locCliques, indsToBeMoved);
diffLocSpCounts = computeDiffInCliqCounts(locSeparators, indsToBeMoved);
unknown_pops = find(isnan(JOIN_DIFFERENCE(i1,(i1+1):end)));
unknown_pops = unknown_pops+i1;
CQ_COUNTS(:,:,i1) = CQ_COUNTS(:,:,i1) - diffCqCounts;
SUM_CQ_COUNTS(:,i1) = SUM_CQ_COUNTS(:,i1) - diffCqSumCounts;
SP_COUNTS(:,:,i1) = SP_COUNTS(:,:,i1) - diffSpCounts;
SUM_SP_COUNTS(:,i1) = SUM_SP_COUNTS(:,i1) - diffSpSumCounts;
LOC_CQ_COUNTS(:,i1) = LOC_CQ_COUNTS(:,i1) - diffLocCqCounts;
LOC_SP_COUNTS(:,i1) = LOC_SP_COUNTS(:,i1) - diffLocSpCounts;
% PARTITION(indsToBeMoved) = -1;
updateLogmlTable(i1);
for i2 = unknown_pops
CQ_COUNTS(:,:,i2) = CQ_COUNTS(:,:,i2) + diffCqCounts;
SUM_CQ_COUNTS(:,i2) = SUM_CQ_COUNTS(:,i2) + diffCqSumCounts;
SP_COUNTS(:,:,i2) = SP_COUNTS(:,:,i2) + diffSpCounts;
SUM_SP_COUNTS(:,i2) = SUM_SP_COUNTS(:,i2) + diffSpSumCounts;
LOC_CQ_COUNTS(:,i2) = LOC_CQ_COUNTS(:,i2) + diffLocCqCounts;
LOC_SP_COUNTS(:,i2) = LOC_SP_COUNTS(:,i2) + diffLocSpCounts;
% PARTITION(indsToBeMoved) = i2;
updateLogmlTable(i2);
logml_new = computeTotalLogml();
JOIN_DIFFERENCE(i1,i2) = logml_new-logml;
JOIN_DIFFERENCE(i2,i1) = logml_new-logml;
CQ_COUNTS(:,:,i2) = CQ_COUNTS(:,:,i2) - diffCqCounts;
SUM_CQ_COUNTS(:,i2) = SUM_CQ_COUNTS(:,i2) - diffCqSumCounts;
SP_COUNTS(:,:,i2) = SP_COUNTS(:,:,i2) - diffSpCounts;
SUM_SP_COUNTS(:,i2) = SUM_SP_COUNTS(:,i2) - diffSpSumCounts;
LOC_CQ_COUNTS(:,i2) = LOC_CQ_COUNTS(:,i2) - diffLocCqCounts;
LOC_SP_COUNTS(:,i2) = LOC_SP_COUNTS(:,i2) - diffLocSpCounts;
% PARTITION(indsToBeMoved) = -1;
updateLogmlTable(i2);
end
CQ_COUNTS(:,:,i1) = CQ_COUNTS(:,:,i1) + diffCqCounts;
SUM_CQ_COUNTS(:,i1) = SUM_CQ_COUNTS(:,i1) + diffCqSumCounts;
SP_COUNTS(:,:,i1) = SP_COUNTS(:,:,i1) + diffSpCounts;
SUM_SP_COUNTS(:,i1) = SUM_SP_COUNTS(:,i1) + diffSpSumCounts;
LOC_CQ_COUNTS(:,i1) = LOC_CQ_COUNTS(:,i1) + diffLocCqCounts;
LOC_SP_COUNTS(:,i1) = LOC_SP_COUNTS(:,i1) + diffLocSpCounts;
% PARTITION(indsToBeMoved) = i1;
updateLogmlTable(i1);
end
end