diff --git a/DESCRIPTION b/DESCRIPTION index 7bfff51..f91aa25 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -36,9 +36,8 @@ Description: Partial R implementation of the BAPS software License: GPL-3 BugReports: https://github.com/ocbe-uio/rBAPS/issues Encoding: UTF-8 -LazyData: true RoxygenNote: 7.1.1 Suggests: testthat (>= 2.1.0) Imports: - methods, ape, vcfR + methods, ape, vcfR, Rsamtools diff --git a/NAMESPACE b/NAMESPACE index 8bb2029..05595f3 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -50,6 +50,7 @@ export(uigetfile) export(uiputfile) export(writeMixtureInfo) import(utils) +importFrom(Rsamtools,scanBam) importFrom(ape,as.DNAbin) importFrom(ape,read.FASTA) importFrom(methods,is) diff --git a/R/greedyMix.R b/R/greedyMix.R index 2e2b552..a0d7194 100644 --- a/R/greedyMix.R +++ b/R/greedyMix.R @@ -4,6 +4,7 @@ #' @param verbose if \code{TRUE}, prints extra output information #' @importFrom utils read.delim #' @importFrom vcfR read.vcfR +#' @importFrom Rsamtools scanBam #' @references Samtools: a suite of programs for interacting #' with high-throughput sequencing data. #' @export