diff --git a/R/tulostaAdmixtureTiedot.R b/R/tulostaAdmixtureTiedot.R index dd40ff9..de4af77 100644 --- a/R/tulostaAdmixtureTiedot.R +++ b/R/tulostaAdmixtureTiedot.R @@ -1,5 +1,5 @@ tulostaAdmixtureTiedot <- function(proportions, uskottavuus, alaRaja, niter) { - # TODO: discover what this function does. Plotting? Get examples? + # ASK: what does this function does. Plotting? Get examples? # h0 <- findobj('Tag','filename1_text') # inputf = get(h0,'String'); # h0 = findobj('Tag','filename2_text'); diff --git a/inst/ext/ExamplesDataFormatting/Notes.md b/inst/ext/ExamplesDataFormatting/Notes.md index 67b3860..7671e58 100644 --- a/inst/ext/ExamplesDataFormatting/Notes.md +++ b/inst/ext/ExamplesDataFormatting/Notes.md @@ -1 +1 @@ -Most of the data in this directory is in the [Genepop format](https://genepop.curtin.edu.au/help_input.html) format. \ No newline at end of file +Most of the data in this directory is in the [Genepop format](https://genepop.curtin.edu.au/help_input.html) format. diff --git a/tests/testthat/test-admix1.R b/tests/testthat/test-admix1.R index ae33745..d755a07 100644 --- a/tests/testthat/test-admix1.R +++ b/tests/testthat/test-admix1.R @@ -148,7 +148,6 @@ test_that("suoritaMuutos works like on Matlab", { }) test_that("laskeMuutokset4 works like on Matlab", { - # TODO: build these tests based on problems found in etsiParas mx1 <- t(c(.4, 7)) expect_equivalent( object = laskeMuutokset4(2, mx1, c(8, 2), 3), diff --git a/tests/testthat/test-convertedBaseFunctions.R b/tests/testthat/test-convertedBaseFunctions.R index 3dba86e..c972153 100644 --- a/tests/testthat/test-convertedBaseFunctions.R +++ b/tests/testthat/test-convertedBaseFunctions.R @@ -223,7 +223,7 @@ test_that("setdiff works as expected", { A <- c(3, 6, 2, 1, 5, 1, 1) B <- c(2, 4, 6) C <- c(1, 3, 5) - expect_equal(setdiff_MATLAB(A, B), C) # TODO: export setdiff_MATLAB + expect_equal(setdiff_MATLAB(A, B), C) A <- data.frame( Var1 = 1:5, Var2 = LETTERS[1:5], diff --git a/tests/testthat/test-greedyMix.R b/tests/testthat/test-greedyMix.R index 7ba13ba..d2ee3e0 100644 --- a/tests/testthat/test-greedyMix.R +++ b/tests/testthat/test-greedyMix.R @@ -33,7 +33,7 @@ test_that("handleData works as expected", { expect_equal(data_obs, data_exp) }) -context("Opening files on greedyMix") +context("Opening files on greedyMix/load_fasta") # # TODO: needs #12 to be fixed before this can be done without user intervention # greedyMix( @@ -41,7 +41,7 @@ context("Opening files on greedyMix") # format = "BAPS", # savePreProcessed = FALSE # ) # Upper bounds 100 100 -# TODO: replace with load_fasta() +# TODO #16: replace with load_fasta() context("Linkage")