Replaced greedyMix() with a stop message

man/load_fasta.Rd

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+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/load_fasta.R
+\name{load_fasta}
+\alias{load_fasta}
+\title{load_fasta}
+\usage{
+load_fasta(msa, keep.singletons = FALSE)
+}
+\arguments{
+\item{msa}{Either the location of a fasta file or ape DNAbin object containing the multiple sequence alignment data to be clustered}
+
+\item{keep.singletons}{A logical indicating whether to consider singleton mutations in calculating the clusters}
+}
+\value{
+A character matrix with filtered SNP data
+}
+\description{
+Loads a fasta file into matrix format ready for
+running the hierBAPS algorithm.
+}
+\examples{
+msa <- system.file("extdata", "seqs.fa", package = "rhierbaps")
+snp.matrix <- load_fasta(msa)
+}