Minor changes for clean check

This commit is contained in:
Waldir Leoncio 2021-08-23 14:34:20 +02:00
parent cabb3318dd
commit db760fe899
7 changed files with 22159 additions and 6 deletions

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@ -3,6 +3,7 @@
#' @details For a list of global variables, check the \code{globals.R} file.
#' @param g the global variable in quesiton.
#' @return TRUE if the variable still contains its original values, FALSE otherwise.
#' @importFrom stats sd
#' @author Waldir Leoncio
isGlobalEmpty <- function(g) {
return(sum(g) == 0 & sd(g) == 0)

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@ -9,11 +9,12 @@
#' @return A character matrix with filtered SNP data
#'
#' @examples
#' msa <- system.file("extdata", "seqs.fa", package = "rhierbaps")
#' msa <- system.file("ext", "seqs.fa", package="rBAPS")
#' snp.matrix <- load_fasta(msa)
#'
#' @author Gerry Tonkin-Hill
#' @seealso rhierbaps::load_fasta
#' @importFrom ape read.FASTA as.DNAbin
#' @export
load_fasta <- function(msa, keep.singletons=FALSE) {