Restyled files

Ran through styler::style_dir() in the R and tests directories in preparation for #23.

man/calculatePopLogml.Rd

@@ -12,7 +12,7 @@ calculatePopLogml(points, fii)
 \item{fii}{fii}
 }
 \description{
-Calculates fuzzy (log) marginal likelihood for a population of 
+Calculates fuzzy (log) marginal likelihood for a population of
 real values using estimate "fii" for the dispersion value, and Jeffreys prior
 for the mean parameter.
 }

man/learn_simple_partition.Rd

@@ -12,6 +12,6 @@ learn_simple_partition(ordered_points, fii)
 \item{fii}{fii}
 }
 \description{
-Goes through all the ways to divide the points into two or 
+Goes through all the ways to divide the points into two or
 three groups. Chooses the partition which obtains highest logml.
 }

man/load_fasta.Rd

@@ -19,9 +19,8 @@ Loads a fasta file into matrix format ready for
 running the hierBAPS algorithm.
 }
 \examples{
-msa <- system.file("ext", "seqs.fa", package="rBAPS")
+msa <- system.file("ext", "seqs.fa", package = "rBAPS")
 snp.matrix <- load_fasta(msa)
-
 }
 \seealso{
 rhierbaps::load_fasta

man/log_gamma.Rd

@@ -13,6 +13,6 @@ log_gamma(x)
 log(gamma(x)) for x > 0, Inf otherwise
 }
 \description{
-Equal to log(gamma(x)) with special handling of x < 0 for 
+Equal to log(gamma(x)) with special handling of x < 0 for
 Matlab compatibility
 }

man/proportion2str.Rd

@@ -16,6 +16,6 @@ a 4-mark presentation of proportion
 Convert proportion to string
 }
 \note{
-The `round` function in R, being ISO-compliant, rounds 8.5 to 8. The 
+The `round` function in R, being ISO-compliant, rounds 8.5 to 8. The
 Matlab equivalent rounds it to 9.
 }