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132 commits

Author SHA1 Message Date
Waldir Leoncio
76828387a3 Fixed basic parsing of FASTA files (#25) 2023-09-11 12:15:30 +02:00
Waldir Leoncio
3537f18d2c Incorporated handleData() on greedyMix() (#25) 2023-08-11 11:18:03 +02:00
Waldir Leoncio
f47e13d3a9 Improved handleData() to handle FASTA (#25) 2023-08-11 11:13:24 +02:00
Waldir Leoncio
95d9d658cb Added numeric output option to load_fasta() (#25) 2023-08-11 11:01:20 +02:00
Waldir Leoncio
bd932e2b6d Added missing documentation for arguments (#25) 2023-08-09 15:27:45 +02:00
Waldir Leoncio
15da6cdced Improved argument retrieval on greedyMix() (#25) 2023-08-09 13:13:50 +02:00
Waldir Leoncio
bfeb2796c2 Improved example (#25) 2023-08-09 13:13:16 +02:00
Waldir Leoncio
3069577ebd Removing handleData() from greedyMix() (#25) 
Apparently that function is only used if the input is Genepop or BAPS format. However, its code might be useful for reducing some of the input of greedyMix(), as it contains the calculation for them.
 2023-08-09 12:50:33 +02:00
Waldir Leoncio
cae1fe4c1e Incorporating subfunctions of greedyMix() (#25) 2023-08-09 12:06:09 +02:00
Waldir Leoncio
687a6fb671 Moved used datasets to /isnt/extdata (#25) 2023-08-09 10:54:48 +02:00
Waldir Leoncio
7aff7bbb82 Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
Waldir Leoncio
fe099e576e Updated docs 2022-11-16 12:51:06 +01:00
Waldir Leoncio
85c412f347 Translated testaaKoordinaatit() (#3) 2022-11-16 11:56:21 +01:00
Waldir Leoncio
46dc08905a Translated laskemuutokset{1-5}() (#3) 2022-09-15 12:47:22 +02:00
Waldir Leoncio
3efb54d8b5 Refactored remaining laskeMuutokset as R6 methods 2022-08-25 13:48:17 +02:00
Waldir Leoncio
c05a500d5f Translated laskeVarmuus (#3) 2022-08-25 13:03:36 +02:00
Waldir Leoncio
1667682c5e Refactored laskeMuutokset4() as an R6 method 2022-08-25 12:54:55 +02:00
Waldir Leoncio
835ac7e6b9 Fixed several linting issues 2022-07-28 15:47:36 +02:00
Waldir Leoncio
ea0190b874 Syntax fixes, added documentation 2022-07-19 14:34:08 +02:00
Waldir Leoncio
f0d4858149 Translated writeMixtureInfoPop() (#2) 2022-05-19 15:07:53 +02:00
Waldir Leoncio
1cc0fba114 Added function documentation 2022-05-13 12:40:34 +02:00
Waldir Leoncio
ae57dd4536 Updated docs 2022-04-13 09:17:40 +02:00
Waldir Leoncio
03db7f4124 Translated handlePopData (#2) 2022-04-13 09:12:59 +02:00
Waldir Leoncio
9ad4fa8c76 Resolved conflicts involving homonymous functions 2022-02-03 10:43:34 +01:00
Waldir Leoncio
69ca345f11 Removed docs from matlab2r files (#21) 2022-02-03 10:10:36 +01:00
Waldir Leoncio
a381fde4bd Added rBAPS help file with matlab2r imports (#21) 2022-02-03 10:09:58 +01:00
Waldir Leoncio
fca9caa731 Restyled files 
Ran through styler::style_dir() in the R and tests directories in preparation for #23.
 2021-11-10 14:25:50 +01:00
Waldir Leoncio
2b70817317 Improved handling of data input on greedyMix 2021-09-03 13:08:40 +02:00
Waldir Leoncio
0cfd13b006 Added SAM/BAM support (closes #18) 2021-09-03 12:50:28 +02:00
Waldir Leoncio
8b44947ecb Fixed dependencies 2021-09-03 11:17:00 +02:00
Waldir Leoncio
12edd330b9 Improved load_fasta validation 2021-09-03 09:09:09 +02:00
Waldir Leoncio
a296f9f8fb greedyMix changed to channel data load (close #16) 2021-09-03 08:50:23 +02:00
Waldir Leoncio
db760fe899 Minor changes for clean check 2021-08-23 14:34:20 +02:00
Waldir Leoncio
04a66aa2c1 Several fixes to code to pass unit tests 2021-08-23 09:10:10 +02:00
Waldir Leoncio
6a124ac3ce Improved documentation of load_fasta (#16) 2021-08-23 06:47:08 +02:00
Waldir Leoncio
cafd194880 Replaced greedyMix() with a stop message 2021-08-23 06:40:49 +02:00
Waldir Leoncio
67170d1c7b Refactoring 2021-06-29 10:37:42 +02:00
Waldir Leoncio
39145ee865 Updated docs 2021-03-31 10:39:15 +02:00
Waldir Leoncio
3b423cdb09 Updated docs 2021-01-15 10:23:22 +01:00
Waldir Leoncio
8989696dd1 Exported functions 2020-12-11 12:32:41 +01:00
Waldir Leoncio
19e212b137 Removed global variables from argument lists 2020-11-19 14:48:33 +01:00
Waldir Leoncio
28d0cb614b Updated docs 2020-11-19 13:33:21 +01:00
Waldir Leoncio
a3fcaf17dd Translated rand_disc 2020-11-19 12:15:16 +01:00
Waldir Leoncio
0257e5fbfb Reorganization and improvements on matlab2r 2020-11-19 10:48:33 +01:00
Waldir Leoncio
46a9249e5a Fixed syntax 2020-11-19 07:53:36 +01:00
Waldir Leoncio
97af90d05d Minor improvements to translator function 2020-11-19 07:49:30 +01:00
Waldir Leoncio
03bec3b4b4 Improved docs 2020-11-09 07:31:33 +01:00
Waldir Leoncio
9ae09f543f Refactoring 2020-11-09 06:26:53 +01:00
Waldir Leoncio
637df694bb Updated docs 2020-10-19 15:57:30 +02:00
Waldir Leoncio
f886feb3a8 Translated admixture_initialization 2020-10-19 13:44:18 +02:00