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Author SHA1 Message Date
Waldir Leoncio
f47e13d3a9 Improved handleData() to handle FASTA (#25) 2023-08-11 11:13:24 +02:00
Waldir Leoncio
95d9d658cb Added numeric output option to load_fasta() (#25) 2023-08-11 11:01:20 +02:00
Waldir Leoncio
a51816d5c0 Fixed test text (#25) 2023-08-11 08:17:56 +02:00
Waldir Leoncio
bd932e2b6d Added missing documentation for arguments (#25) 2023-08-09 15:27:45 +02:00
Waldir Leoncio
85c8c01816 Syntax fix (#25) 2023-08-09 15:11:54 +02:00
Waldir Leoncio
2739442541 Delayed resolution of FIXMEs (#25) 2023-08-09 15:09:13 +02:00
Waldir Leoncio
bcdfc5d22d Workaround for usage of MATLAB any() (#25) 2023-08-09 15:08:00 +02:00
Waldir Leoncio
b75d38fee4 Fixed argument passing (#25) 2023-08-09 14:45:43 +02:00
Waldir Leoncio
3d3131b68c squash! Replaced 1:npops with seq_len(npops) (#25) 
Replaced 1: with seq_len() and seq_along() (#25).

Helps working around NULL and 0 values.
 2023-08-09 14:40:09 +02:00
Waldir Leoncio
7bb1a8181e Commented-out debugging print() usage (#25) 2023-08-09 14:19:06 +02:00
Waldir Leoncio
f93f7c7de9 Replaced 1:npops with seq_len(npops) (#25) 2023-08-09 14:18:43 +02:00
Waldir Leoncio
5d3acc7cb0 Improved messages (#25) 2023-08-09 14:18:20 +02:00
Waldir Leoncio
3ab0a73a02 Added iter limit to prevent infinite loop (#25) 2023-08-09 14:17:54 +02:00
Waldir Leoncio
b034158e2b Improved handling of NULL objects (#25) 2023-08-09 14:17:17 +02:00
Waldir Leoncio
843a929938 Syntax fix (#25) 2023-08-09 14:16:04 +02:00
Waldir Leoncio
15da6cdced Improved argument retrieval on greedyMix() (#25) 2023-08-09 13:13:50 +02:00
Waldir Leoncio
bfeb2796c2 Improved example (#25) 2023-08-09 13:13:16 +02:00
Waldir Leoncio
ba968e77d5 Syntax fix to indMix() (#25) 2023-08-09 13:12:18 +02:00
Waldir Leoncio
3069577ebd Removing handleData() from greedyMix() (#25) 
Apparently that function is only used if the input is Genepop or BAPS format. However, its code might be useful for reducing some of the input of greedyMix(), as it contains the calculation for them.
 2023-08-09 12:50:33 +02:00
Waldir Leoncio
cae1fe4c1e Incorporating subfunctions of greedyMix() (#25) 2023-08-09 12:06:09 +02:00
Waldir Leoncio
103dc6acd6 Added MATLAB code from original greedyMix() (#25) 2023-08-09 11:26:29 +02:00
Waldir Leoncio
bf7d05eb8d Moved file import away from greedyMix() (#25) 2023-08-09 11:11:12 +02:00
Waldir Leoncio
7888012bf6 Add NEWS.md 2023-08-09 10:56:24 +02:00
Waldir Leoncio
687a6fb671 Moved used datasets to /isnt/extdata (#25) 2023-08-09 10:54:48 +02:00
Waldir Leoncio
bb7eadd2ba Increment version number to 0.0.0.9021 2023-08-09 09:36:27 +02:00
Waldir Leoncio
7aff7bbb82 Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
Waldir Leoncio
449982a083 Merge branch 'issue-3' into develop 2023-02-16 15:30:30 +01:00
Waldir Leoncio
da0efad4a7 Increment version number to 0.0.0.9020 2023-02-16 15:30:20 +01:00
Waldir Leoncio
8bddd70781 Syntax fixes (#3) 2023-02-16 15:30:15 +01:00
Waldir Leoncio
ad09ffcf28 Merge branch 'issue-3' into develop 2023-02-10 15:25:54 +01:00
Waldir Leoncio
2b8747025c Increment version number to 0.0.0.9019 2023-02-10 15:25:38 +01:00
Waldir Leoncio
a8cae95c82 Added tests, fixed subfunctions (#3) 2023-02-10 15:11:54 +01:00
Waldir Leoncio
606078c355 Merge branch 'issue-3' into develop 2023-02-07 10:40:41 +01:00
Waldir Leoncio
1a622b4f97 Increment version number to 0.0.0.9018 2023-02-07 10:40:32 +01:00
Waldir Leoncio
5171a4f179 Added unit tests (#3) 2023-02-07 10:37:29 +01:00
Waldir Leoncio
3cfbe5bfe8 fixup! Translated testFastaData() (#3) 2023-02-07 10:37:00 +01:00
Waldir Leoncio
b5c70ac555 Merge branch 'fix-check' into develop 2023-02-01 13:47:23 +01:00
Waldir Leoncio
9ea62ffd1f Increment version number to 0.0.0.9017 2023-02-01 13:47:12 +01:00
Waldir Leoncio
45a41a9faa Fixed log2() on getPopDistancesByKL() 2023-02-01 13:46:58 +01:00
Waldir Leoncio
4ba4d4b934 Merge branch 'issue-3' into develop 2023-01-23 11:22:19 +01:00
Waldir Leoncio
0f47072599 Increment version number to 0.0.0.9016 2023-01-23 11:22:06 +01:00
Waldir Leoncio
257046dc5f Fixed synxtax of zeallot call (#3) 2023-01-23 11:22:01 +01:00
Waldir Leoncio
8ce9f3af04 Translated testFastaData() (#3) 2023-01-23 11:21:16 +01:00
Waldir Leoncio
71c8e98e55 Adding matlab2r::log2 to NAMESPACE 
Checks will continue to fail until matlab2r::log2() is on CRAN. In the
meantime, one could use the function from the development version:

install_github("ocbe-uio/matlab2r")
 2022-12-23 14:47:41 +01:00
Waldir Leoncio
7c7b4c5322 Merge branch 'quick-fix' into develop 2022-12-23 14:15:01 +01:00
Waldir Leoncio
28b7d979a6 Increment version number to 0.0.0.9015 2022-12-23 14:14:35 +01:00
Waldir Leoncio
3a479d1232 Making it clear which package log2() is coming from (#3) 2022-12-23 14:14:27 +01:00
Waldir Leoncio
12a33a3933 Merge branch 'issue-3' into develop 2022-12-23 13:42:48 +01:00
Waldir Leoncio
8dc8a198a3 Increment version number to 0.0.0.9014 2022-12-23 13:42:35 +01:00
Waldir Leoncio
98cde6b23e Translated dec2bitv() (#3) 2022-12-23 13:42:05 +01:00