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  • 6a9eea6a2a Modify readme develop Maximilian Friedersdorff 2025-03-18 10:25:30 +00:00
  • 99848b1660 Merge branch 'issue-9' into develop Waldir Leoncio 2025-01-15 11:11:37 +01:00
  • 880f12c819 Updated NEWS.md Waldir Leoncio 2025-01-15 11:11:27 +01:00
  • f998b3a20f Increment version number to 0.0.0.9032 Waldir Leoncio 2025-01-15 11:07:56 +01:00
  • 57dcff2209 Replaced randga() with rgamma() (closes #9) Waldir Leoncio 2025-01-15 11:07:44 +01:00
  • 371ec35a06
         Added alt link to original BAPS page (#26) Waldir Leoncio 2024-12-12 09:37:37 +01:00
  • 7cbee479de Merge branch 'no-changelog' into develop Waldir Leoncio 2024-09-27 14:27:40 +02:00
  • a887f9a850 Increment version number to 0.0.0.9031 Waldir Leoncio 2024-09-27 14:24:56 +02:00
  • 2df425793c Removed CHANGELOG.md Waldir Leoncio 2024-09-27 14:24:49 +02:00
  • 8e51878f50 Merge branch 'issue-24' into develop Waldir Leoncio 2024-09-27 13:26:49 +02:00
  • a3b65da34c Updated NEWS.md (#24) Waldir Leoncio 2024-09-27 13:25:49 +02:00
  • d4260b92b1 Increment version number to 0.0.0.9030 Waldir Leoncio 2024-09-27 13:25:15 +02:00
  • b57bc3f299 Added logml tests for #24 Waldir Leoncio 2024-09-27 13:22:40 +02:00
  • 99ec89fd85 Fixed calculation of distances Waldir Leoncio 2024-09-27 13:18:10 +02:00
  • 4b0448d05e Fixed calculation of logml Waldir Leoncio 2024-09-27 12:59:55 +02:00
  • f70bc93630 Adjusted unit tests Waldir Leoncio 2024-09-27 10:47:32 +02:00
  • 5449bef162 Fixed output Waldir Leoncio 2024-09-27 10:47:24 +02:00
  • dd6ee912bd Syntax fixes Waldir Leoncio 2024-09-27 06:59:18 +02:00
  • 1d87be9b83 Merge branch 'issue-24' into develop Waldir Leoncio 2024-09-13 14:24:18 +02:00
  • aa675d1804 Updated docs Waldir Leoncio 2024-09-13 14:23:11 +02:00
  • b4fe834822 Temp-wrapping disfunctional code Waldir Leoncio 2024-09-13 14:19:25 +02:00
  • 822521af9b Merge branch 'process-genepop' into issue-24 Waldir Leoncio 2024-09-13 13:53:12 +02:00
  • 9e554d5d4b Aligned processing of Genepop with MATLAB code Waldir Leoncio 2024-09-13 13:53:01 +02:00
  • 31575a5b9e Dropped support for GenePop on importFile() Waldir Leoncio 2024-09-13 13:52:39 +02:00
  • 00605016d6 Added process_GenePop_data() Waldir Leoncio 2024-09-13 13:51:25 +02:00
  • 036ec00bbd Fixed addAlleles() Waldir Leoncio 2024-09-13 13:39:24 +02:00
  • 9e3ea49398 handleData defaults to BAPS format Waldir Leoncio 2024-09-13 12:42:46 +02:00
  • 54b0b081ea Added unit tests for greedyMix() on GenePop (#24) Waldir Leoncio 2024-08-26 13:26:52 +02:00
  • 12884cfcb6 Added GenePop data, txt and gen (#24) Waldir Leoncio 2024-08-26 13:23:03 +02:00
  • fa7e750c69 Merge branch 'fix-ci' into develop Waldir Leoncio 2024-08-26 10:15:36 +02:00
  • 9ab4dfb29f Updated actions/checkout to v4 Waldir Leoncio 2024-08-26 06:53:55 +02:00
  • 010f18dd19 Merge branch 'issue-24' into develop Waldir Leoncio 2024-08-26 06:32:51 +02:00
  • d925545e70 Increment version number to 0.0.0.9029 Waldir Leoncio 2024-08-26 06:30:56 +02:00
  • 9ff5f39c39 Disabled FASTA tests on greedyMix() (#24) Waldir Leoncio 2024-08-26 06:30:49 +02:00
  • 6f70f6f752 Added synthetic FASTA file (#24) Waldir Leoncio 2024-08-26 06:10:07 +02:00
  • 99e272a80f Ensure diffInCounts returns as.matrix (#24) Waldir Leoncio 2024-08-26 06:09:27 +02:00
  • b7282d67df Adapted tests to FASTA on greedyMix() (#24) Waldir Leoncio 2024-08-19 13:32:05 +02:00
  • 43886d649f Removed baps file pointing to fasta Waldir Leoncio 2024-08-19 13:29:18 +02:00
  • 471c380ce3 Improved conversion from FASTA to BAPS (#24) Waldir Leoncio 2024-08-09 15:33:03 +02:00
  • ca358ff0fb Improved handling of FASTA data (#24) Waldir Leoncio 2024-08-09 14:57:07 +02:00
  • 73b0a70138 process_BAPS_data() can handle file being an R object Waldir Leoncio 2024-08-09 13:55:55 +02:00
  • 7b7968f00b Added function to convert from FASTA to BAPS (#24) Waldir Leoncio 2024-08-09 13:19:35 +02:00
  • 6e08c35f13 Unwrapped `greedyMix() example (#24) Waldir Leoncio 2024-08-07 11:42:29 +02:00
  • 5cc111f0c1 Merge branch 'issue-24' into develop Waldir Leoncio 2024-07-02 16:54:33 +02:00
  • d861ffb551 Increment version number to 0.0.0.9028 Waldir Leoncio 2024-07-02 16:53:10 +02:00
  • 3ce6659120 Updated docs Waldir Leoncio 2024-07-02 16:53:04 +02:00
  • 95ff2378b1 Added unit tests (#24) Waldir Leoncio 2024-07-02 16:39:48 +02:00
  • e873075ebf Fixed greedyMix() for BAPS files (#24) 🍾 Waldir Leoncio 2024-07-02 16:39:38 +02:00
  • 6aecf38231 Fixed indMix() and subfunctions (#24) Waldir Leoncio 2024-07-02 12:17:02 +02:00
  • e4af251307 Fixed tests (#24) Waldir Leoncio 2024-07-02 11:23:22 +02:00
  • dd025e48c9 Merge branch 'issue-24' into develop Waldir Leoncio 2024-06-26 14:29:35 +02:00
  • 00ecfa4fd8 Increment version number to 0.0.0.9027 Waldir Leoncio 2024-06-26 14:29:25 +02:00
  • 320bb28a7a Fixed docs Waldir Leoncio 2024-06-26 14:27:02 +02:00
  • 2d5d93adbc Merge branch 'issue-24' into develop Waldir Leoncio 2024-04-11 09:49:00 +02:00
  • e615bb8b50 Increment version number to 0.0.0.9026 Waldir Leoncio 2024-04-11 09:47:49 +02:00
  • 2a815f15cd Added (commented) test for BAPS data (#24) Waldir Leoncio 2024-04-10 16:06:23 +02:00
  • 99f28ba215 Renamed global environment, fixed assignments (#24) Waldir Leoncio 2024-04-10 16:04:07 +02:00
  • ec959fcfb2 Fixes to laskeMuutokset() (#24) Waldir Leoncio 2024-04-10 15:09:12 +02:00
  • d1e567c326 Syntax fix to indMix() (#24) Waldir Leoncio 2024-04-10 15:07:51 +02:00
  • 55a36e81ae Retranslated computeDiffInCounts() (#24) Waldir Leoncio 2024-04-10 15:06:38 +02:00
  • c3b8da0012 Changed default npops to 3 (#24) Waldir Leoncio 2024-04-10 14:25:45 +02:00
  • 58a5e5a2fd laskeMuutokset() reads npop from parent functions (#24) Waldir Leoncio 2024-04-10 14:25:22 +02:00
  • 5deadcf3ee Using a dedicated environment for globals (#24) Waldir Leoncio 2024-04-10 14:23:09 +02:00
  • 55d302ab67 Retranslated computePopulationLogml() (#24) Waldir Leoncio 2024-04-10 14:19:20 +02:00
  • 98b5e7a154 Added/renamed BAPS example data (#24) Waldir Leoncio 2024-04-10 14:18:17 +02:00
  • 9b8da3ab4d Merge branch 'baps-format' into develop Waldir Leoncio 2024-04-08 13:35:51 +02:00
  • 6d875dfd8d Increment version number to 0.0.0.9025 Waldir Leoncio 2024-04-08 13:34:21 +02:00
  • f5c09094b0 Skips greedyMix() example until #24 is fixed Waldir Leoncio 2024-04-08 13:34:14 +02:00
  • f676042a17 Updated documentation (#24) Waldir Leoncio 2024-04-08 13:29:03 +02:00
  • 6209bb33fa Fails for FAST input to greedyMix() (#24) Waldir Leoncio 2024-04-08 13:14:54 +02:00
  • 6c3e2aff04 Fixed calculation og ninds (#24) Waldir Leoncio 2024-04-08 10:11:25 +02:00
  • 5c35b9ad1e Bugfixes to indMix() and subfunctions (#24) Waldir Leoncio 2024-03-25 16:06:33 +01:00
  • 26ab0107a8 Improved handling of BAPS format (#24) Waldir Leoncio 2024-03-25 16:05:00 +01:00
  • f361975254 Fixed calculation of ninds ekat (#24) Waldir Leoncio 2024-03-25 16:04:11 +01:00
  • 530442487f Added processing of BAPS format Waldir Leoncio 2024-03-25 12:35:31 +01:00
  • d2ec5894b3 Removed MATLAB files Waldir Leoncio 2024-01-19 09:49:10 +01:00
  • 0f3c5708d6 Merge compress-writeMixtureInfo-output into develop Waldir Leoncio 2023-09-14 12:55:51 +02:00
  • 9ed39d403b Updated docs Waldir Leoncio 2023-09-14 12:53:34 +02:00
  • 273edafd30 Improved output of writeMixtureInfo() Waldir Leoncio 2023-09-14 11:59:44 +02:00
  • 63af25a63d Auto-recognizing format of greedyMix() data Waldir Leoncio 2023-09-14 11:11:37 +02:00
  • a73752364b Fixed output of greedyMix() Waldir Leoncio 2023-09-14 11:02:06 +02:00
  • bde3be6344 Merge branch 'silence-writeMixtureInfo' into develop Waldir Leoncio 2023-09-11 14:07:04 +02:00
  • ceaf7eca4b Added verbose argument to writeMixtureInfo() Waldir Leoncio 2023-09-11 14:06:45 +02:00
  • fa2381411f Increment version number to 0.0.0.9023 Waldir Leoncio 2023-09-11 13:54:52 +02:00
  • e3f14ee97d Fixed object name in test Waldir Leoncio 2023-09-11 13:53:42 +02:00
  • 59fbb0a167 Merge branch 'issue-25' into develop Waldir Leoncio 2023-09-11 13:15:55 +02:00
  • ce954bf801 Adjusted unit tests for #25 issue-25 Waldir Leoncio 2023-09-11 13:14:23 +02:00
  • 2b756576ac Fixed sink() usage Waldir Leoncio 2023-09-11 13:14:08 +02:00
  • 70ec460106 Fixed docs Waldir Leoncio 2023-09-11 13:13:55 +02:00
  • 882fcd4112 Exporting importFile() Waldir Leoncio 2023-09-11 12:51:41 +02:00
  • 3e4044bcec Improved handling of supported formats for greedyMix() (#25) Waldir Leoncio 2023-09-11 12:37:25 +02:00
  • 76828387a3 Fixed basic parsing of FASTA files (#25) Waldir Leoncio 2023-09-11 12:15:30 +02:00
  • a88f31b3a5 Increment version number to 0.0.0.9022 Waldir Leoncio 2023-08-11 16:27:23 +02:00
  • cfb71bfd6d Fixed syntax (#25) Waldir Leoncio 2023-08-11 16:23:02 +02:00
  • 44e418f838 Improved printing (#25) Waldir Leoncio 2023-08-11 16:22:45 +02:00
  • 177685b6a2 Partial reversion of b034158 (#25) Waldir Leoncio 2023-08-11 16:22:29 +02:00
  • 372891fbe1 Fixed to indMix (#25) Waldir Leoncio 2023-08-11 14:31:08 +02:00
  • 3537f18d2c Incorporated handleData() on greedyMix() (#25) Waldir Leoncio 2023-08-11 11:18:03 +02:00
  • f47e13d3a9 Improved handleData() to handle FASTA (#25) Waldir Leoncio 2023-08-11 11:13:24 +02:00
  • 95d9d658cb Added numeric output option to load_fasta() (#25) Waldir Leoncio 2023-08-11 11:01:20 +02:00