function [NT,AA] = seqcode() %SEQCODE - Return vector for mapping sequence letters to integers % % Syntax: [NT,AA] = seqcode % % See also: % Molecular Biology & Evolution Toolbox, (C) 2005 % Author: James J. Cai % Email: jamescai@hkusua.hku.hk % Website: http://web.hku.hk/~jamescai/ % Last revision: 5/28/2005 NT = 'ACGTDI?-'; if (nargout>1) AA = 'ARNDCQEGHILKMFPSTWYV*-'; end % AANames = {'ala' 'arg' 'asn' 'asp' 'cys' 'gln' 'glu' 'gly' 'his' 'ile' 'leu' 'lys' 'met' ... % 'phe' 'pro' 'ser' 'thr' 'trp' 'tyr' 'val'};