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ourMELONS/R
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Waldir Leoncio 3069577ebd Removing handleData() from greedyMix() (#25) 
Apparently that function is only used if the input is Genepop or BAPS format. However, its code might be useful for reducing some of the input of greedyMix(), as it contains the calculation for them.
2023-08-09 12:50:33 +02:00
..
addAlleles.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
addToSummary.R Resolved conflicts involving homonymous functions 2022-02-03 10:43:34 +01:00
admix1.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
admixture_initialization.R Resolved conflicts involving homonymous functions 2022-02-03 10:43:34 +01:00
argmin.R Translated argmin() 2022-12-22 15:06:04 +01:00
arvoSeuraavaTi.R Resolved conflicts involving homonymous functions 2022-02-03 10:43:34 +01:00
calculatePopLogml.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
checkLogml.R Translated checkLogml() (#3) 2022-09-15 13:02:32 +02:00
clearGlobalVars.R Restyled files 2021-11-10 14:25:50 +01:00
cliques_to_jtree.R Translated cliques_to_jtree() 2022-12-22 15:06:04 +01:00
cluster_own.R Fixed several linting issues 2022-07-28 15:47:36 +02:00
clusternum.R Restyled files 2021-11-10 14:25:50 +01:00
comparePartitions.R Incorporating subfunctions of greedyMix() (#25) 2023-08-09 12:06:09 +02:00
computeAllFreqs2.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
computeCounts.R Translated computeCounts() (#3) 2022-07-28 11:16:59 +02:00
computeDiffInCliqCounts.R Translated computeDiffInCliqCounts() (#3) 2022-07-28 14:23:35 +02:00
computeDiffInCounts.R Resolved conflicts involving homonymous functions 2022-02-03 10:43:34 +01:00
computeIndLogml.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
computeLogml.R Resolved conflicts involving homonymous functions 2022-02-03 10:43:34 +01:00
computePersonalAllFreqs.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
computePopulationLogml.R Fixed several linting issues 2022-07-28 15:47:36 +02:00
computeRows.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
dec2bitv.R Added tests, fixed subfunctions (#3) 2023-02-10 15:11:54 +01:00
displine.R Restyled files 2021-11-10 14:25:50 +01:00
elim_order.R Translated elim_order() 2022-12-22 15:06:04 +01:00
etsiParas.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
fgetl-fopen.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
fiksaaPartitioYksiloTasolle.R Fixed several linting issues 2022-07-28 15:47:36 +02:00
findCliques.R Removed translating TODOs 2022-12-22 13:29:54 +01:00
findEmptyPop.R Resolved conflicts involving homonymous functions 2022-02-03 10:43:34 +01:00
findOutRowsFromInd.R Fixed several linting issues 2022-07-28 15:47:36 +02:00
getDistances.R Fixed several linting issues 2022-07-28 15:47:36 +02:00
getPopDistancesByKL.R Fixed log2() on getPopDistancesByKL() 2023-02-01 13:46:58 +01:00
globals.R Translated getPopDistancesByKL (#2) 2022-04-12 14:14:12 +02:00
greedyMix.R Removing handleData() from greedyMix() (#25) 2023-08-09 12:50:33 +02:00
greedyPopMix.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
handleData.R Removing handleData() from greedyMix() (#25) 2023-08-09 12:50:33 +02:00
handlePopData.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
importFile.R Moved file import away from greedyMix() (#25) 2023-08-09 11:11:12 +02:00
ind2subv.R Syntax fixes (#3) 2023-02-16 15:30:15 +01:00
indMix.R Refactored remaining laskeMuutokset as R6 methods 2022-08-25 13:48:17 +02:00
indMixWrapper.R Incorporating subfunctions of greedyMix() (#25) 2023-08-09 12:06:09 +02:00
initialCounts.R Resolved conflicts involving homonymous functions 2022-02-03 10:43:34 +01:00
initializeGammaln.R Restyled files 2021-11-10 14:25:50 +01:00
initialPopCounts.R Resolved conflicts involving homonymous functions 2022-02-03 10:43:34 +01:00
initPopNames.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
isGlobalEmpty.R Restyled files 2021-11-10 14:25:50 +01:00
kldiv2str.R Restyled files 2021-11-10 14:25:50 +01:00
laskeKlitik.R Translated laskeKlitik() 2022-12-21 14:27:29 +01:00
laskeLoggis.R Restyled files 2021-11-10 14:25:50 +01:00
laskeMuutokset12345.R Translated laskemuutokset{1-5}() (#3) 2022-09-15 12:47:22 +02:00
laskeOsaDist.R Restyled files 2021-11-10 14:25:50 +01:00
laskeVarmuus.R Translated laskeVarmuus (#3) 2022-08-25 13:03:36 +02:00
learn_partition_modified.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
learn_simple_partition.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
linkage.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
load_fasta.R Moved used datasets to /isnt/extdata (#25) 2023-08-09 10:54:48 +02:00
log_gamma.R Restyled files 2021-11-10 14:25:50 +01:00
logml2String.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
lueGenePopData.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
lueGenePopDataPop.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
lueNimi.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
minimum_spanning_tree.R Translated minimum_spanning_tree() (#3) 2022-12-23 10:45:50 +01:00
myintersect.R Added tests, fixed subfunctions (#3) 2023-02-10 15:11:54 +01:00
myisvector.R Added tests, fixed subfunctions (#3) 2023-02-10 15:11:54 +01:00
mysetdiff.R Translated mysetdiff() (#3) 2022-07-28 14:43:04 +02:00
mysize.R Translated mysize() 2022-12-22 15:06:04 +01:00
mysubset.R Translated mysubset() 2022-12-22 13:31:41 +01:00
myunion.R Translated myunion() 2022-12-22 13:36:07 +01:00
neighbors.R Translated neighbors() 2022-12-22 13:12:44 +01:00
newGetDistances.R Resolved conflicts involving homonymous functions 2022-02-03 10:43:34 +01:00
noIndex.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
omaRound.R Restyled files 2021-11-10 14:25:50 +01:00
ownNum2Str.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
palautaYks.R Restyled files 2021-11-10 14:25:50 +01:00
poistaLiianPienet.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
poistaTyhjatPopulaatiot.R Resolved conflicts involving homonymous functions 2022-02-03 10:43:34 +01:00
proportion2str.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
rand_disc.R Resolved conflicts involving homonymous functions 2022-02-03 10:43:34 +01:00
randdir.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
randga.R Fixed several linting issues 2022-07-28 15:47:36 +02:00
rBAPS-package.R Translated dec2bitv() (#3) 2022-12-23 13:42:05 +01:00
returnInOrder.R Restyled files 2021-11-10 14:25:50 +01:00
rivinSisaltamienMjonojenLkm.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
selvitaDigitFormat.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
setdiag.R Translated setdiag() 2022-12-22 13:43:36 +01:00
simulateAllFreqs.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
simulateIndividuals.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
simuloiAlleeli.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
suoritaMuutos.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
takeLine.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
testaaGenePopData.R Fixed several linting issues 2022-07-28 15:47:36 +02:00
testaaKoordinaatit.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
testaaOnkoKunnollinenBapsData.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
testaaPop.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
testFastaData.R fixup! Translated testFastaData() (#3) 2023-02-07 10:37:00 +01:00
triangulate.R Removed translating TODOs 2022-12-22 13:29:54 +01:00
tulostaAdmixtureTiedot.R Fixed several linting issues 2022-07-28 15:47:36 +02:00
updateGlobalVariables.R Resolved conflicts involving homonymous functions 2022-02-03 10:43:34 +01:00
viewPartition.R Restyled files 2021-11-10 14:25:50 +01:00
waitALittle.R Syntax fixes, added documentation 2022-07-19 14:34:08 +02:00
writeMixtureInfo.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00
writeMixtureInfoPop.R Internalized all functions except greedyMix() and load_fasta() (#25) 2023-08-09 09:36:15 +02:00