3069577ebd
Apparently that function is only used if the input is Genepop or BAPS format. However, its code might be useful for reducing some of the input of greedyMix(), as it contains the calculation for them.
41 lines
855 B
R
41 lines
855 B
R
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/greedyMix.R
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\name{greedyMix}
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\alias{greedyMix}
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\title{Clustering of individuals}
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\usage{
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greedyMix(
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data,
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format,
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c.rows,
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partitionCompare.partitions,
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ninds,
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rowsFromInd,
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noalle,
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adjprior,
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priorTerm,
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alleleCodesinp,
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popnames,
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fixedK = FALSE,
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partition_compare = FALSE,
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verbose = TRUE
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)
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}
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\arguments{
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\item{data}{data file}
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\item{format}{Data format. Format supported: "FASTA", "VCF" ,"BAM", "GenePop"}
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\item{verbose}{if \code{TRUE}, prints extra output information}
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}
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\description{
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Clustering of individuals
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}
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\examples{
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data <- system.file("extdata", "FASTA_clustering_haploid.fasta", package = "rBAPS")
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greedyMix(data)
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}
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\references{
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Samtools: a suite of programs for interacting
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with high-throughput sequencing data. <http://www.htslib.org/>
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}
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