| .. |
|
addAlleles.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
addToSummary.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
admix1.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
admixture_initialization.R
|
Resolved conflicts involving homonymous functions
|
2022-02-03 10:43:34 +01:00 |
|
argmin.R
|
Translated argmin()
|
2022-12-22 15:06:04 +01:00 |
|
arvoSeuraavaTi.R
|
Resolved conflicts involving homonymous functions
|
2022-02-03 10:43:34 +01:00 |
|
calculatePopLogml.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
checkLogml.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
clearGlobalVars.R
|
Restyled files
|
2021-11-10 14:25:50 +01:00 |
|
cliques_to_jtree.R
|
Translated cliques_to_jtree()
|
2022-12-22 15:06:04 +01:00 |
|
cluster_own.R
|
Fixed several linting issues
|
2022-07-28 15:47:36 +02:00 |
|
clusternum.R
|
Restyled files
|
2021-11-10 14:25:50 +01:00 |
|
comparePartitions.R
|
Incorporating subfunctions of greedyMix() (#25)
|
2023-08-09 12:06:09 +02:00 |
|
computeAllFreqs2.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
computeCounts.R
|
Translated computeCounts() (#3)
|
2022-07-28 11:16:59 +02:00 |
|
computeDiffInCliqCounts.R
|
Translated computeDiffInCliqCounts() (#3)
|
2022-07-28 14:23:35 +02:00 |
|
computeDiffInCounts.R
|
Retranslated computeDiffInCounts() (#24)
|
2024-04-10 16:07:00 +02:00 |
|
computeIndLogml.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
computeLogml.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
computePersonalAllFreqs.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
computePopulationLogml.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
computeRows.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
convert_FASTA_to_BAPS.R
|
Improved conversion from FASTA to BAPS (#24)
|
2024-08-09 15:33:03 +02:00 |
|
dec2bitv.R
|
Added tests, fixed subfunctions (#3)
|
2023-02-10 15:11:54 +01:00 |
|
displine.R
|
Restyled files
|
2021-11-10 14:25:50 +01:00 |
|
elim_order.R
|
Translated elim_order()
|
2022-12-22 15:06:04 +01:00 |
|
etsiParas.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
fgetl-fopen.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
fiksaaPartitioYksiloTasolle.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
findCliques.R
|
Removed translating TODOs
|
2022-12-22 13:29:54 +01:00 |
|
findEmptyPop.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
findOutRowsFromInd.R
|
Fixed several linting issues
|
2022-07-28 15:47:36 +02:00 |
|
getDistances.R
|
Fixed several linting issues
|
2022-07-28 15:47:36 +02:00 |
|
getPopDistancesByKL.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
globals.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
greedyMix.R
|
Improved handling of FASTA data (#24)
|
2024-08-09 14:57:07 +02:00 |
|
greedyPopMix.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
handleData.R
|
Improved conversion from FASTA to BAPS (#24)
|
2024-08-09 15:33:03 +02:00 |
|
handlePopData.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
importFile.R
|
Improved handling of BAPS format (#24)
|
2024-03-25 16:10:43 +01:00 |
|
ind2subv.R
|
Syntax fixes (#3)
|
2023-02-16 15:30:15 +01:00 |
|
indMix.R
|
Fixed indMix() and subfunctions (#24)
|
2024-07-02 16:31:17 +02:00 |
|
indMixWrapper.R
|
Fixed argument passing (#25)
|
2023-08-09 14:45:43 +02:00 |
|
initialCounts.R
|
Bugfixes to indMix() and subfunctions (#24)
|
2024-03-25 16:10:44 +01:00 |
|
initializeGammaln.R
|
Restyled files
|
2021-11-10 14:25:50 +01:00 |
|
initialPopCounts.R
|
Resolved conflicts involving homonymous functions
|
2022-02-03 10:43:34 +01:00 |
|
initPopNames.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
isGlobalEmpty.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
kldiv2str.R
|
Improved output of writeMixtureInfo()
|
2023-09-14 12:52:30 +02:00 |
|
laskeKlitik.R
|
Translated laskeKlitik()
|
2022-12-21 14:27:29 +01:00 |
|
laskeLoggis.R
|
Fixed basic parsing of FASTA files (#25)
|
2023-09-11 12:15:30 +02:00 |
|
laskeMuutokset12345.R
|
Fixed indMix() and subfunctions (#24)
|
2024-07-02 16:31:17 +02:00 |
|
laskeOsaDist.R
|
Fixed indMix() and subfunctions (#24)
|
2024-07-02 16:31:17 +02:00 |
|
laskeVarmuus.R
|
Translated laskeVarmuus (#3)
|
2022-08-25 13:03:36 +02:00 |
|
learn_partition_modified.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
learn_simple_partition.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
linkage.R
|
Bugfixes to indMix() and subfunctions (#24)
|
2024-03-25 16:10:44 +01:00 |
|
load_fasta.R
|
Fixed docs
|
2023-09-11 13:13:55 +02:00 |
|
log_gamma.R
|
Restyled files
|
2021-11-10 14:25:50 +01:00 |
|
logml2String.R
|
Updated documentation (#24)
|
2024-04-08 13:29:03 +02:00 |
|
lueGenePopData.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
lueGenePopDataPop.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
lueNimi.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
minimum_spanning_tree.R
|
Translated minimum_spanning_tree() (#3)
|
2022-12-23 10:45:50 +01:00 |
|
myintersect.R
|
Added tests, fixed subfunctions (#3)
|
2023-02-10 15:11:54 +01:00 |
|
myisvector.R
|
Added tests, fixed subfunctions (#3)
|
2023-02-10 15:11:54 +01:00 |
|
mysetdiff.R
|
Translated mysetdiff() (#3)
|
2022-07-28 14:43:04 +02:00 |
|
mysize.R
|
Translated mysize()
|
2022-12-22 15:06:04 +01:00 |
|
mysubset.R
|
Translated mysubset()
|
2022-12-22 13:31:41 +01:00 |
|
myunion.R
|
Translated myunion()
|
2022-12-22 13:36:07 +01:00 |
|
neighbors.R
|
Translated neighbors()
|
2022-12-22 13:12:44 +01:00 |
|
newGetDistances.R
|
Added processing of BAPS format
|
2024-03-25 16:10:41 +01:00 |
|
noIndex.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
omaRound.R
|
Restyled files
|
2021-11-10 14:25:50 +01:00 |
|
ownNum2Str.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
palautaYks.R
|
Restyled files
|
2021-11-10 14:25:50 +01:00 |
|
poistaLiianPienet.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
poistaTyhjatPopulaatiot.R
|
Fixed indMix() and subfunctions (#24)
|
2024-07-02 16:31:17 +02:00 |
|
process_BAPS_data.R
|
process_BAPS_data() can handle file being an R object
|
2024-08-09 13:55:55 +02:00 |
|
proportion2str.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
rand_disc.R
|
Resolved conflicts involving homonymous functions
|
2022-02-03 10:43:34 +01:00 |
|
randdir.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
randga.R
|
Fixed several linting issues
|
2022-07-28 15:47:36 +02:00 |
|
rBAPS-package.R
|
Updated documentation (#24)
|
2024-04-08 13:29:03 +02:00 |
|
returnInOrder.R
|
Fixed indMix() and subfunctions (#24)
|
2024-07-02 16:31:17 +02:00 |
|
rivinSisaltamienMjonojenLkm.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
selvitaDigitFormat.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
setdiag.R
|
Translated setdiag()
|
2022-12-22 13:43:36 +01:00 |
|
simulateAllFreqs.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
simulateIndividuals.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
simuloiAlleeli.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
suoritaMuutos.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
takeLine.R
|
Improved output of writeMixtureInfo()
|
2023-09-14 12:52:30 +02:00 |
|
testaaGenePopData.R
|
Fixed several linting issues
|
2022-07-28 15:47:36 +02:00 |
|
testaaKoordinaatit.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
testaaOnkoKunnollinenBapsData.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
testaaPop.R
|
Internalized all functions except greedyMix() and load_fasta() (#25)
|
2023-08-09 09:36:15 +02:00 |
|
testFastaData.R
|
fixup! Translated testFastaData() (#3)
|
2023-02-07 10:37:00 +01:00 |
|
triangulate.R
|
Removed translating TODOs
|
2022-12-22 13:29:54 +01:00 |
|
tulostaAdmixtureTiedot.R
|
Fixed several linting issues
|
2022-07-28 15:47:36 +02:00 |
|
updateGlobalVariables.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
viewPartition.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
|
waitALittle.R
|
Syntax fixes, added documentation
|
2022-07-19 14:34:08 +02:00 |
|
writeMixtureInfo.R
|
Fixed greedyMix() for BAPS files (#24) 🍾
|
2024-07-02 16:39:38 +02:00 |
|
writeMixtureInfoPop.R
|
Renamed global environment, fixed assignments (#24)
|
2024-04-11 09:47:29 +02:00 |
