30 lines
812 B
R
30 lines
812 B
R
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/load_fasta.R
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\name{load_fasta}
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\alias{load_fasta}
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\title{load_fasta}
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\usage{
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load_fasta(msa, keep_singletons = FALSE, output_numbers = TRUE)
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}
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\arguments{
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\item{msa}{Either the location of a fasta file or ape DNAbin object containing the multiple sequence alignment data to be clustered}
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\item{keep_singletons}{A logical indicating whether to consider singleton mutations in calculating the clusters}
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}
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\value{
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A character matrix with filtered SNP data
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}
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\description{
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Loads a fasta file into matrix format ready for
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running the hierBAPS algorithm.
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}
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\examples{
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msa <- system.file("extdata", "seqs.fa", package = "rBAPS")
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snp.matrix <- load_fasta(msa)
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}
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\seealso{
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rhierbaps::load_fasta
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}
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\author{
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Gerry Tonkin-Hill, Waldir Leoncio
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}
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