| .. |
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addAlleles.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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addToSummary.R
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Resolved conflicts involving homonymous functions
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2022-02-03 10:43:34 +01:00 |
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admix1.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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admixture_initialization.R
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Resolved conflicts involving homonymous functions
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2022-02-03 10:43:34 +01:00 |
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argmin.R
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Translated argmin()
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2022-12-22 15:06:04 +01:00 |
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arvoSeuraavaTi.R
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Resolved conflicts involving homonymous functions
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2022-02-03 10:43:34 +01:00 |
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calculatePopLogml.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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checkLogml.R
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Translated checkLogml() (#3)
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2022-09-15 13:02:32 +02:00 |
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clearGlobalVars.R
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Restyled files
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2021-11-10 14:25:50 +01:00 |
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cliques_to_jtree.R
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Translated cliques_to_jtree()
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2022-12-22 15:06:04 +01:00 |
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cluster_own.R
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Fixed several linting issues
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2022-07-28 15:47:36 +02:00 |
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clusternum.R
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Restyled files
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2021-11-10 14:25:50 +01:00 |
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comparePartitions.R
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Incorporating subfunctions of greedyMix() (#25)
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2023-08-09 12:06:09 +02:00 |
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computeAllFreqs2.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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computeCounts.R
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Translated computeCounts() (#3)
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2022-07-28 11:16:59 +02:00 |
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computeDiffInCliqCounts.R
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Translated computeDiffInCliqCounts() (#3)
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2022-07-28 14:23:35 +02:00 |
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computeDiffInCounts.R
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Resolved conflicts involving homonymous functions
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2022-02-03 10:43:34 +01:00 |
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computeIndLogml.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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computeLogml.R
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Resolved conflicts involving homonymous functions
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2022-02-03 10:43:34 +01:00 |
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computePersonalAllFreqs.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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computePopulationLogml.R
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Improved handling of NULL objects (#25)
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2023-08-09 14:17:17 +02:00 |
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computeRows.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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dec2bitv.R
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Added tests, fixed subfunctions (#3)
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2023-02-10 15:11:54 +01:00 |
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displine.R
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Restyled files
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2021-11-10 14:25:50 +01:00 |
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elim_order.R
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Translated elim_order()
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2022-12-22 15:06:04 +01:00 |
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etsiParas.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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fgetl-fopen.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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fiksaaPartitioYksiloTasolle.R
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Fixed several linting issues
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2022-07-28 15:47:36 +02:00 |
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findCliques.R
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Removed translating TODOs
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2022-12-22 13:29:54 +01:00 |
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findEmptyPop.R
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Resolved conflicts involving homonymous functions
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2022-02-03 10:43:34 +01:00 |
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findOutRowsFromInd.R
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Fixed several linting issues
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2022-07-28 15:47:36 +02:00 |
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getDistances.R
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Fixed several linting issues
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2022-07-28 15:47:36 +02:00 |
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getPopDistancesByKL.R
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Fixed log2() on getPopDistancesByKL()
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2023-02-01 13:46:58 +01:00 |
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globals.R
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Translated getPopDistancesByKL (#2)
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2022-04-12 14:14:12 +02:00 |
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greedyMix.R
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Fixed calculation og ninds (#24)
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2024-04-08 10:11:25 +02:00 |
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greedyPopMix.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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handleData.R
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Added processing of BAPS format
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2024-03-25 16:10:41 +01:00 |
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handlePopData.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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importFile.R
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Improved handling of BAPS format (#24)
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2024-03-25 16:10:43 +01:00 |
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ind2subv.R
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Syntax fixes (#3)
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2023-02-16 15:30:15 +01:00 |
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indMix.R
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Bugfixes to indMix() and subfunctions (#24)
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2024-03-25 16:10:44 +01:00 |
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indMixWrapper.R
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Fixed argument passing (#25)
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2023-08-09 14:45:43 +02:00 |
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initialCounts.R
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Bugfixes to indMix() and subfunctions (#24)
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2024-03-25 16:10:44 +01:00 |
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initializeGammaln.R
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Restyled files
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2021-11-10 14:25:50 +01:00 |
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initialPopCounts.R
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Resolved conflicts involving homonymous functions
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2022-02-03 10:43:34 +01:00 |
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initPopNames.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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isGlobalEmpty.R
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Restyled files
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2021-11-10 14:25:50 +01:00 |
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kldiv2str.R
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Improved output of writeMixtureInfo()
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2023-09-14 12:52:30 +02:00 |
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laskeKlitik.R
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Translated laskeKlitik()
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2022-12-21 14:27:29 +01:00 |
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laskeLoggis.R
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Fixed basic parsing of FASTA files (#25)
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2023-09-11 12:15:30 +02:00 |
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laskeMuutokset12345.R
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Fixed to indMix (#25)
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2023-08-11 14:31:08 +02:00 |
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laskeOsaDist.R
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Restyled files
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2021-11-10 14:25:50 +01:00 |
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laskeVarmuus.R
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Translated laskeVarmuus (#3)
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2022-08-25 13:03:36 +02:00 |
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learn_partition_modified.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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learn_simple_partition.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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linkage.R
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Bugfixes to indMix() and subfunctions (#24)
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2024-03-25 16:10:44 +01:00 |
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load_fasta.R
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Fixed docs
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2023-09-11 13:13:55 +02:00 |
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log_gamma.R
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Restyled files
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2021-11-10 14:25:50 +01:00 |
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logml2String.R
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Improved output of writeMixtureInfo()
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2023-09-14 12:52:30 +02:00 |
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lueGenePopData.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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lueGenePopDataPop.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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lueNimi.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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minimum_spanning_tree.R
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Translated minimum_spanning_tree() (#3)
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2022-12-23 10:45:50 +01:00 |
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myintersect.R
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Added tests, fixed subfunctions (#3)
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2023-02-10 15:11:54 +01:00 |
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myisvector.R
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Added tests, fixed subfunctions (#3)
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2023-02-10 15:11:54 +01:00 |
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mysetdiff.R
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Translated mysetdiff() (#3)
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2022-07-28 14:43:04 +02:00 |
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mysize.R
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Translated mysize()
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2022-12-22 15:06:04 +01:00 |
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mysubset.R
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Translated mysubset()
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2022-12-22 13:31:41 +01:00 |
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myunion.R
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Translated myunion()
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2022-12-22 13:36:07 +01:00 |
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neighbors.R
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Translated neighbors()
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2022-12-22 13:12:44 +01:00 |
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newGetDistances.R
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Added processing of BAPS format
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2024-03-25 16:10:41 +01:00 |
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noIndex.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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omaRound.R
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Restyled files
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2021-11-10 14:25:50 +01:00 |
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ownNum2Str.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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palautaYks.R
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Restyled files
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2021-11-10 14:25:50 +01:00 |
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poistaLiianPienet.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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poistaTyhjatPopulaatiot.R
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Workaround for usage of MATLAB any() (#25)
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2023-08-09 15:08:00 +02:00 |
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process_BAPS_data.R
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Added processing of BAPS format
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2024-03-25 16:10:41 +01:00 |
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proportion2str.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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rand_disc.R
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Resolved conflicts involving homonymous functions
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2022-02-03 10:43:34 +01:00 |
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randdir.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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randga.R
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Fixed several linting issues
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2022-07-28 15:47:36 +02:00 |
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rBAPS-package.R
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Translated dec2bitv() (#3)
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2022-12-23 13:42:05 +01:00 |
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returnInOrder.R
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Restyled files
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2021-11-10 14:25:50 +01:00 |
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rivinSisaltamienMjonojenLkm.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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selvitaDigitFormat.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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setdiag.R
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Translated setdiag()
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2022-12-22 13:43:36 +01:00 |
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simulateAllFreqs.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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simulateIndividuals.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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simuloiAlleeli.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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suoritaMuutos.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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takeLine.R
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Improved output of writeMixtureInfo()
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2023-09-14 12:52:30 +02:00 |
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testaaGenePopData.R
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Fixed several linting issues
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2022-07-28 15:47:36 +02:00 |
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testaaKoordinaatit.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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testaaOnkoKunnollinenBapsData.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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testaaPop.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
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testFastaData.R
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fixup! Translated testFastaData() (#3)
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2023-02-07 10:37:00 +01:00 |
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triangulate.R
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Removed translating TODOs
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2022-12-22 13:29:54 +01:00 |
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tulostaAdmixtureTiedot.R
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Fixed several linting issues
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2022-07-28 15:47:36 +02:00 |
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updateGlobalVariables.R
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Resolved conflicts involving homonymous functions
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2022-02-03 10:43:34 +01:00 |
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viewPartition.R
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Restyled files
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2021-11-10 14:25:50 +01:00 |
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waitALittle.R
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Syntax fixes, added documentation
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2022-07-19 14:34:08 +02:00 |
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writeMixtureInfo.R
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Improved output of writeMixtureInfo()
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2023-09-14 12:52:30 +02:00 |
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writeMixtureInfoPop.R
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Internalized all functions except greedyMix() and load_fasta() (#25)
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2023-08-09 09:36:15 +02:00 |
