34 lines
1.1 KiB
R
34 lines
1.1 KiB
R
context("greedyPopMix functions")
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test_that("Auxiliary functions work properly", {
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# Testing findOutRowsFromInd -------------------------------------------------
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x <- matrix(11:16, 3)
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y <- matrix(2:7, 3)
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z <- list(
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popnames2 = matrix(c(11:13, seq(1.5, 2.5, 0.5)), 3),
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rowsFromInd = 2
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)
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expect_equal(findOutRowsFromInd(x, y, "Diploid"), z)
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# Testing getPopDistancesByKL ------------------------------------------------
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x2 <- matrix(seq(4, 14, 2), 3)
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expect_equal(
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getPopDistancesByKL(x2),
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list(
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Z = matrix(c(c(1, 101:198), c(2:100), rep(0, 99)), nrow = 99, ncol = 3),
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distances = as.matrix(rep(0, 4950))
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)
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)
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# Testing handlePopData ------------------------------------------------------
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x3 <- matrix(c(9, 4, 1, 8, 5, 2, 1, 2, 3), 3)
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y3 <- list(
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newData = matrix(c(3: 1, 3: 1, 1: 3), 3),
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rows = matrix(c(1: 3, 1: 3), 3),
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alleleCodes = matrix(c(1, 4, 9, 2, 5, 8), 3),
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noalle = matrix(c(3, 3), 1),
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adjprior = matrix(rep(3/9, 6), 3),
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priorTerm = 5.9125
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)
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expect_equal(handlePopData(x3), y3, tol = 1e-4)
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})
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