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A joke fork of rBAPS. Name: ourMELONS, because 'our' can be pronounced like 'r' and MELONS because 'Mathematical EvaLuation of Ordered Nucleic acid Sequences'. Don't take it seriously, it's a joke, this repo will probably be deleted soon enough.
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README.md

rBAPS

R implementation of the compiled Matlab BAPS software for Bayesian Analysis of Population Structure.

Installation

rBAPS is currently under development and a stable version is yet to be released. You can install the development version by issuing the command below on an interactive R session.

remotes::install_github("ocbe-uio/rBAPS", "dev")

References

Scientific papers

  • Corander, J. and Marttinen, P. (2006), Bayesian identification of admixture events using multilocus molecular markers. Molecular Ecology, 15: 2833-2843. doi:10.1111/j.1365-294X.2006.02994.x
  • Corander, J., Sirén, J., & Arjas, E. (2008). Bayesian spatial modeling of genetic population structure. Computational Statistics, 23(1), 111-129. doi:10.1007/s00180-007-0072-x
  • Corander, J., Marttinen, P., Sirén, J. et al. Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinformatics 9, 539 (2008) doi:10.1186/1471-2105-9-539
  • Tonkin-Hill G, Lees JA, Bentley SD et al. RhierBAPS: An R implementation of the population clustering algorithm hierBAPS [version 1; peer review: 2 approved]. Wellcome Open Res 2018, 3:93 (https://doi.org/10.12688/wellcomeopenres.14694.1)

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