97 lines
3.8 KiB
YAML
97 lines
3.8 KiB
YAML
# This workflow uses actions that are not certified by GitHub.
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# They are provided by a third-party and are governed by
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# separate terms of service, privacy policy, and support
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# documentation.
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#
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# See https://github.com/r-lib/actions/tree/master/examples#readme for
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# additional example workflows available for the R community.
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# ======================================================== #
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# Determines when the action is triggered #
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# ======================================================== #
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on: [push, pull_request]
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name: R-CMD-check
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# ======================================================== #
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# Determine actions to take #
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# ======================================================== #
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jobs:
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R-CMD-check:
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runs-on: ${{ matrix.config.os }}
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name: ${{ matrix.config.os }} (R ${{ matrix.config.r }})
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strategy:
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fail-fast: false
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matrix:
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config:
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- {os: windows-latest, r: 'release'}
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- {os: macOS-latest, r: 'release'}
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- {os: ubuntu-latest, r: 'release'}
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- {os: ubuntu-latest, r: 'devel'}
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steps:
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# Checking out code -------------------------------------- #
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- name: Checking out the repository
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uses: actions/checkout@v2
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# Setting up environment --------------------------------- #
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- name: Setting up R ${{ matrix.config.r }} on ${{ matrix.config.os }}
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uses: r-lib/actions/setup-r@v1
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with:
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r-version: ${{ matrix.config.r }}
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# Installing Pandoc -------------------------------------- #
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- name: Installing Pandoc
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uses: r-lib/actions/setup-pandoc@v1
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# Querying dependencies ---------------------------------- #
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- name: Querying dependencies
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run: |
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install.packages('remotes')
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saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
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writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
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shell: Rscript {0}
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# Restoring R package cache ------------------------------ #
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- name: Restoring R package cache
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uses: actions/cache@v2
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with:
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path: ${{ env.R_LIBS_USER }}
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key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
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restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
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# Installing system dependencies ------------------------- #
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- name: Installing system dependencies
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if: runner.os == 'Linux'
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run: |
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apt install libcurl4-openssl-dev
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while read -r cmd
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do
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eval sudo $cmd
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done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
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# Installing package dependencies ------------------------ #
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- name: Installing package dependencies
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run: |
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remotes::install_cran(c("rcmdcheck", "BiocManager"))
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BiocManager::install("Rsamtools")
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remotes::install_deps(dependencies = TRUE)
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shell: Rscript {0}
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# Checking package --------------------------------------- #
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- name: Checking package
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env:
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_R_CHECK_CRAN_INCOMING_REMOTE_: false
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run: |
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options(crayon.enabled = TRUE)
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rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
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shell: Rscript {0}
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# Uploading check results -------------------------------- #
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- name: Uploading check results
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if: failure()
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uses: actions/upload-artifact@main
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with:
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name: ${{ runner.os }}-r${{ matrix.config.r }}-results
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path: check
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