Merge branch 'issue-3' into develop

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: rBAPS
 Title: Bayesian Analysis of Population Structure
-Version: 0.0.0.9013
+Version: 0.0.0.9014
 Date: 2020-11-09
 Authors@R:
     c(

R/dec2bitv.R

@@ -0,0 +1,16 @@
+dec2bitv <- function(d, n) {
+  # DEC2BITV Convert a decimal integer to a bit vector.
+  # bits <- dec2bitv(d, n) is just like the built - in dec2bin, except the answer is a vector, not a as.character.
+  # n is an optional minimum length on the bit vector.
+  # If d is a vector,  each row of the output array will be a bit vector.
+
+  if (nargin() < 2) {
+    n <- 1 # Need at least one digit even for 0.
+  }
+  d <- d[]
+
+  f <- e <- NA
+  c(f, e) <- log2(max(d)) # How many digits do we need to represent the numbers?
+    bits <- floor(d * 2 ^ (seq(1 - max(n, e), 0))) %% 2
+  return(bits)
+}

R/ind2subv.R

@@ -1,38 +1,37 @@
-ind2subv <- function(siz, ndx) stop("Needs translation")
+ind2subv <- function(siz, ndx) {
-# function sub = ind2subv(siz, ndx)
+  #  IND2SUBV Like the built - in ind2sub, but returns the answer as a row vector.
-# % IND2SUBV Like the built-in ind2sub, but returns the answer as a row vector.
+  #  sub <- ind2subv(siz, ndx)
-# % sub = ind2subv(siz, ndx)
+  #  siz and ndx can be row or column vectors.
-# %
+  #  sub will be of size length(ndx) * length(siz).
-# % siz and ndx can be row or column vectors.
+  #  Example
-# % sub will be of size length(ndx) * length(siz).
+  #  ind2subv([2 2 2], 1:8) returns
-# %
+  #   [1 1 1
-# % Example
+  #    2 1 1
-# % ind2subv([2 2 2], 1:8) returns
+  #     ...
-# %  [1 1 1
+  #    2 2 2]
-# %   2 1 1
+  #  That is, the leftmost digit toggle fastest.
-# %   ...
+  #
-# %   2 2 2]
+  #  See also SUBV2IND
-# % That is, the leftmost digit toggle fastest.
-# %
-# % See also SUBV2IND
 
-# n = length(siz);
+  n <- length(siz)
 
-# if n==0
+  if (n == 0) {
-#   sub = ndx;
+    sub <- ndx
-#   return;
+    return(sub)
-# end
+  }
 
-# if all(siz==2)
+  if (all(siz == 2)) {
-#   sub = dec2bitv(ndx-1, n);
+    sub <- dec2bitv(ndx - 1, n)
-#   sub = sub(:,n:-1:1)+1;
+    sub <- sub[, seq(n, 1, - 1)] + 1
-#   return;
+    return(sub)
-# end
+  }
 
-# cp = [1 cumprod(siz(:)')];
+  cp <- c(1, cumprod(t(siz[])))
-# ndx = ndx(:) - 1;
+  ndx <- ndx[] - 1
-# sub = zeros(length(ndx), n);
+  sub <- zeros(length(ndx), n)
-# for i = n:-1:1 % i'th digit
+  for (i in seq(n, 1, -1)) {# i'th digit
-#   sub(:,i) = floor(ndx/cp(i))+1;
+    sub[, i] <- floor(ndx / cp[i]) + 1
-#   ndx = rem(ndx,cp(i));
+    ndx <- ndx %% cp(i)
-# end
+  }
+  return(sub)
+}

R/rBAPS-package.R

@@ -10,5 +10,5 @@
 #' size sortrows squeeze strcmp times zeros disp
 #' @importFrom stats runif
 #' @importFrom zeallot %<-%
-#' @importFrom matlab2r nargin
+#' @importFrom matlab2r nargin log2
 NULL