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Updated TODOs to match issues

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This commit is contained in:
Waldir Leoncio 2021-09-03 09:14:52 +02:00
parent 75df74cb2c
commit 448b3fe226
2 changed files with 6 additions and 6 deletions
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6
R/greedyMix.R
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@ -9,12 +9,12 @@ greedyMix <- function(data, format) {
out <- load_fasta(data)
} else if (format == "vcf") {
stop("VCF files not yet supported." )
# TODO #16: implement load_vcf()
# TODO #17: implement load_vcf()
} else if (format == "sam") {
stop("SAM files not yet supported." )
# TODO #16: implement load_sam()
# TODO #18: implement load_sam()
} else if(format == "genepop") {
# TODO #16: implement load_genepop()
# TODO #19: implement load_genepop()
stop("GenePop files not yet supported." )
} else {
stop("Format not supported.")

6
tests/testthat/test-greedyMix.R
View file

@ -41,9 +41,9 @@ df_fasta <- greedyMix(
data = paste(path_inst, "FASTA_clustering_haploid.fasta", sep="/"),
format ="fasta"
)
# TODO: add example reading VCF
# TODO: add example reading SAM
# TODO: add example reading Genpop
# TODO #17: add example reading VCF
# TODO #18: add example reading SAM
# TODO #19: add example reading Genpop
test_that("Files are imported correctly", {
expect_equal(dim(df_fasta), c(5, 99))
})