Moved used datasets to /isnt/extdata (#25)

R/greedyMix.R

@@ -9,6 +9,9 @@
 #' @references Samtools: a suite of programs for interacting
 #' with high-throughput sequencing data. <http://www.htslib.org/>
 #' @export
+#' @examples
+#' data <- system.file("extdata", "FASTA_clustering_haploid.fasta", package = "rBAPS")
+#' greedyMix(data)
 greedyMix <- function(data, format, verbose = TRUE) {
   # Parsing data format ------------------------------------------------------
 

R/load_fasta.R

@@ -9,7 +9,7 @@
 #' @return A character matrix with filtered SNP data
 #'
 #' @examples
-#' msa <- system.file("ext", "seqs.fa", package = "rBAPS")
+#' msa <- system.file("extdata", "seqs.fa", package = "rBAPS")
 #' snp.matrix <- load_fasta(msa)
 #' @author Gerry Tonkin-Hill, Waldir Leoncio
 #' @seealso rhierbaps::load_fasta