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Fixed dependencies

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This commit is contained in:
Waldir Leoncio 2021-09-03 11:17:00 +02:00
parent c06943d1b4
commit 8b44947ecb
4 changed files with 6 additions and 3 deletions
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3
DESCRIPTION
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@ -41,5 +41,4 @@ RoxygenNote: 7.1.1
Suggests: Suggests:
testthat (>= 2.1.0) testthat (>= 2.1.0)
Imports: Imports:
methods, methods, ape, vcfR
ape

1
NAMESPACE
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@ -57,3 +57,4 @@ importFrom(stats,runif)
importFrom(stats,sd) importFrom(stats,sd)
importFrom(utils,read.delim) importFrom(utils,read.delim)
importFrom(utils,write.table) importFrom(utils,write.table)
importFrom(vcfR,read.vcfR)

1
R/greedyMix.R
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@ -3,6 +3,7 @@
#' @param format Format of the data c("FASTA", "VCF" ,"SAM", or "GenePop") #' @param format Format of the data c("FASTA", "VCF" ,"SAM", or "GenePop")
#' @param verbose if \code{TRUE}, prints extra output information #' @param verbose if \code{TRUE}, prints extra output information
#' @importFrom utils read.delim #' @importFrom utils read.delim
#' @importFrom vcfR read.vcfR
#' @export #' @export
greedyMix <- function(data, format, verbose = TRUE) { greedyMix <- function(data, format, verbose = TRUE) {
format <- tolower(format) format <- tolower(format)

4
man/greedyMix.Rd
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@ -4,12 +4,14 @@
\alias{greedyMix} \alias{greedyMix}
\title{Clustering of individuals} \title{Clustering of individuals}
\usage{ \usage{
greedyMix(data, format) greedyMix(data, format, verbose = TRUE)
} }
\arguments{ \arguments{
\item{data}{data file} \item{data}{data file}
\item{format}{Format of the data c("FASTA", "VCF" ,"SAM", or "GenePop")} \item{format}{Format of the data c("FASTA", "VCF" ,"SAM", or "GenePop")}
\item{verbose}{if \code{TRUE}, prints extra output information}
} }
\description{ \description{
Clustering of individuals Clustering of individuals