Fixed dependencies

DESCRIPTION

@@ -41,5 +41,4 @@ RoxygenNote: 7.1.1
 Suggests:
     testthat (>= 2.1.0)
 Imports:
-    methods,
-    ape
+    methods, ape, vcfR

NAMESPACE

@@ -57,3 +57,4 @@ importFrom(stats,runif)
 importFrom(stats,sd)
 importFrom(utils,read.delim)
 importFrom(utils,write.table)
+importFrom(vcfR,read.vcfR)

R/greedyMix.R

@@ -3,6 +3,7 @@
 #' @param format Format of the data c("FASTA", "VCF" ,"SAM", or "GenePop")
 #' @param verbose if \code{TRUE}, prints extra output information
 #' @importFrom utils read.delim
+#' @importFrom vcfR read.vcfR
 #' @export
 greedyMix <- function(data, format, verbose = TRUE) {
 	format <- tolower(format)

man/greedyMix.Rd

@@ -4,12 +4,14 @@
 \alias{greedyMix}
 \title{Clustering of individuals}
 \usage{
-greedyMix(data, format)
+greedyMix(data, format, verbose = TRUE)
 }
 \arguments{
 \item{data}{data file}
 
 \item{format}{Format of the data c("FASTA", "VCF" ,"SAM", or "GenePop")}
+
+\item{verbose}{if \code{TRUE}, prints extra output information}
 }
 \description{
 Clustering of individuals