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Dependency fixes

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This commit is contained in:
Waldir Leoncio 2021-09-03 12:56:00 +02:00
parent 1b1999d2b8
commit be2dbd02b2
3 changed files with 3 additions and 2 deletions
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3
DESCRIPTION
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@ -36,9 +36,8 @@ Description: Partial R implementation of the BAPS software
License: GPL-3 License: GPL-3
BugReports: https://github.com/ocbe-uio/rBAPS/issues BugReports: https://github.com/ocbe-uio/rBAPS/issues
Encoding: UTF-8 Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1 RoxygenNote: 7.1.1
Suggests: Suggests:
testthat (>= 2.1.0) testthat (>= 2.1.0)
Imports: Imports:
methods, ape, vcfR methods, ape, vcfR, Rsamtools

1
NAMESPACE
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@ -50,6 +50,7 @@ export(uigetfile)
export(uiputfile) export(uiputfile)
export(writeMixtureInfo) export(writeMixtureInfo)
import(utils) import(utils)
importFrom(Rsamtools,scanBam)
importFrom(ape,as.DNAbin) importFrom(ape,as.DNAbin)
importFrom(ape,read.FASTA) importFrom(ape,read.FASTA)
importFrom(methods,is) importFrom(methods,is)

1
R/greedyMix.R
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@ -4,6 +4,7 @@
#' @param verbose if \code{TRUE}, prints extra output information #' @param verbose if \code{TRUE}, prints extra output information
#' @importFrom utils read.delim #' @importFrom utils read.delim
#' @importFrom vcfR read.vcfR #' @importFrom vcfR read.vcfR
#' @importFrom Rsamtools scanBam
#' @references Samtools: a suite of programs for interacting #' @references Samtools: a suite of programs for interacting
#' with high-throughput sequencing data. <http://www.htslib.org/> #' with high-throughput sequencing data. <http://www.htslib.org/>
#' @export #' @export