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Split release and devel BiocManager installation

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This commit is contained in:
Waldir Leoncio 2022-08-17 11:33:15 +02:00
parent ad4bcc6696
commit c88c282d5c
1 changed files with 9 additions and 1 deletions
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10
.github/workflows/build.yml vendored
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@ -72,13 +72,21 @@ jobs:
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
# Installing package dependencies ------------------------ # # Installing package dependencies ------------------------ #
- name: Installing package dependencies - name: Installing package dependencies (release)
if: ${{ matrix.config.r == 'release' }}
run: | run: |
remotes::install_cran(c("rcmdcheck", "BiocManager")) remotes::install_cran(c("rcmdcheck", "BiocManager"))
BiocManager::install("GenomicRanges") BiocManager::install("GenomicRanges")
BiocManager::install("Rsamtools") BiocManager::install("Rsamtools")
remotes::install_deps(dependencies = TRUE) remotes::install_deps(dependencies = TRUE)
shell: Rscript {0} shell: Rscript {0}
- name: Installing package dependencies (devel)
if: ${{ matrix.config.r == 'devel' }}
run: |
remotes::install_cran(c("rcmdcheck", "BiocManager"))
remotes::install_deps(dependencies = TRUE)
BiocManager::install(version = "devel")
shell: Rscript {0}
# Checking package --------------------------------------- # # Checking package --------------------------------------- #
- name: Checking package - name: Checking package