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Merge issue-20-fix-CI into develop (closes #20)

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Waldir Leoncio 2021-11-10 12:46:27 +01:00
commit ced8b0f7f7
1 changed files with 3 additions and 6 deletions
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9
.github/workflows/r.yml vendored
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@ -10,12 +10,7 @@
# Determines when the action is triggered # # Determines when the action is triggered #
# ======================================================== # # ======================================================== #
on: on: [push, pull_request]
push:
branches: [ develop ]
pull_request:
branches: [ develop ]
name: R-CMD-check name: R-CMD-check
# ======================================================== # # ======================================================== #
@ -70,6 +65,7 @@ jobs:
- name: Installing system dependencies - name: Installing system dependencies
if: runner.os == 'Linux' if: runner.os == 'Linux'
run: | run: |
sudo apt-get install libcurl4-openssl-dev
while read -r cmd while read -r cmd
do do
eval sudo $cmd eval sudo $cmd
@ -79,6 +75,7 @@ jobs:
- name: Installing package dependencies - name: Installing package dependencies
run: | run: |
remotes::install_cran(c("rcmdcheck", "BiocManager")) remotes::install_cran(c("rcmdcheck", "BiocManager"))
BiocManager::install("GenomicRanges")
BiocManager::install("Rsamtools") BiocManager::install("Rsamtools")
remotes::install_deps(dependencies = TRUE) remotes::install_deps(dependencies = TRUE)
shell: Rscript {0} shell: Rscript {0}