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Skips greedyMix() example until #24 is fixed

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Waldir Leoncio 2024-04-08 13:34:14 +02:00
parent f676042a17
commit f5c09094b0
2 changed files with 6 additions and 2 deletions
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2
R/greedyMix.R
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@ -19,8 +19,10 @@
#' with high-throughput sequencing data. <http://www.htslib.org/> #' with high-throughput sequencing data. <http://www.htslib.org/>
#' @export #' @export
#' @examples #' @examples
#' \dontrun{ # TEMP: unwrap once #24 is resolved
#' data <- system.file("extdata", "BAPS_format_clustering_diploid.txt", package = "rBAPS") #' data <- system.file("extdata", "BAPS_format_clustering_diploid.txt", package = "rBAPS")
#' greedyMix(data, "baps") #' greedyMix(data, "baps")
#' } # TEMP: unwrap once #24 is resolved
greedyMix <- function( greedyMix <- function(
data, format = gsub("^.*\\.", "", data), partitionCompare = NULL, npops = 1L, data, format = gsub("^.*\\.", "", data), partitionCompare = NULL, npops = 1L,
counts = NULL, sumcounts = NULL, max_iter = 100L, alleleCodes = NULL, counts = NULL, sumcounts = NULL, max_iter = 100L, alleleCodes = NULL,

6
man/greedyMix.Rd
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@ -48,8 +48,10 @@ greedyMix(
Clustering of individuals Clustering of individuals
} }
\examples{ \examples{
data <- system.file("extdata", "FASTA_clustering_haploid.fasta", package = "rBAPS") \dontrun{ # TEMP: unwrap once #24 is resolved
greedyMix(data, "fasta") data <- system.file("extdata", "BAPS_format_clustering_diploid.txt", package = "rBAPS")
greedyMix(data, "baps")
} # TEMP: unwrap once #24 is resolved
} }
\references{ \references{
Samtools: a suite of programs for interacting Samtools: a suite of programs for interacting