Reorganizing tests
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1 changed files with 11 additions and 6 deletions
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@ -1,14 +1,17 @@
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context("greedyPopMix functions")
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test_that("Auxiliary functions work properly", {
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# Testing findOutRowsFromInd -------------------------------------------------
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x <- matrix(11:16, 3)
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y <- matrix(2:7, 3)
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z <- list(
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popnames2 = matrix(c(11:13, seq(1.5, 2.5, 0.5)), 3),
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rowsFromInd = 2
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)
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x2 <- matrix(seq(4, 14, 2), 3)
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expect_equal(findOutRowsFromInd(x, y, "Diploid"), z)
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# Testing getPopDistancesByKL ------------------------------------------------
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x2 <- matrix(seq(4, 14, 2), 3)
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expect_equal(
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getPopDistancesByKL(x2),
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list(
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@ -16,14 +19,16 @@ test_that("Auxiliary functions work properly", {
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distances = as.matrix(rep(0, 4950))
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)
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)
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# Testing handlePopData ------------------------------------------------------
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x3 <- matrix(c(9, 4, 1, 8, 5, 2, 1, 2, 3), 3)
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y3 <- list(
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newData = matrix(c(3:1, 3:1, 1:3), 3),
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rows = matrix(c(1:3, 1:3), 3),
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newData = matrix(c(3: 1, 3: 1, 1: 3), 3),
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rows = matrix(c(1: 3, 1: 3), 3),
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alleleCodes = matrix(c(1, 4, 9, 2, 5, 8), 3),
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noalle = c(3, 3),
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adjprior = matrix(rep(3/9, 6), 3),
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priorTerm = 5.9125
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noalle = c(3, 3),
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adjprior = matrix(rep(3/9, 6), 3),
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priorTerm = 5.9125
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)
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expect_equal(handlePopData(x3), y3)
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})
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