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33 commits

Author SHA1 Message Date
Waldir Leoncio
54b0b081ea Added unit tests for greedyMix() on GenePop (#24) 2024-08-26 13:26:52 +02:00
Waldir Leoncio
9ff5f39c39 Disabled FASTA tests on greedyMix() (#24) 2024-08-26 06:30:49 +02:00
Waldir Leoncio
b7282d67df Adapted tests to FASTA on greedyMix() (#24) 2024-08-19 13:32:05 +02:00
Waldir Leoncio
43886d649f Removed baps file pointing to fasta 2024-08-19 13:29:18 +02:00
Waldir Leoncio
95ff2378b1 Added unit tests (#24) 2024-07-02 16:39:48 +02:00
Waldir Leoncio
e4af251307 Fixed tests (#24) 2024-07-02 11:23:22 +02:00
Waldir Leoncio
2a815f15cd Added (commented) test for BAPS data (#24) 2024-04-11 09:47:30 +02:00
Waldir Leoncio
98b5e7a154 Added/renamed BAPS example data (#24) 2024-04-10 16:06:56 +02:00
Waldir Leoncio
6209bb33fa Fails for FAST input to greedyMix() (#24) 
This is a desirable feature, but was not implemented in the original BAPS, so better leave it out until the original planned features is working.
 2024-04-08 13:14:54 +02:00
Waldir Leoncio
e3f14ee97d Fixed object name in test 2023-09-11 13:53:42 +02:00
Waldir Leoncio
ce954bf801 Adjusted unit tests for #25 2023-09-11 13:14:23 +02:00
Waldir Leoncio
a51816d5c0 Fixed test text (#25) 2023-08-11 08:17:56 +02:00
Waldir Leoncio
687a6fb671 Moved used datasets to /isnt/extdata (#25) 2023-08-09 10:54:48 +02:00
Waldir Leoncio
835ac7e6b9 Fixed several linting issues 2022-07-28 15:47:36 +02:00
Waldir Leoncio
fca9caa731 Restyled files 
Ran through styler::style_dir() in the R and tests directories in preparation for #23.
 2021-11-10 14:25:50 +01:00
Waldir Leoncio
d105c40d39 Refactoring 2021-09-03 12:50:40 +02:00
Waldir Leoncio
0cfd13b006 Added SAM/BAM support (closes #18) 2021-09-03 12:50:28 +02:00
Waldir Leoncio
3fd15086af Added greedyMix support for VCF (closes #17) 2021-09-03 11:10:06 +02:00
Waldir Leoncio
448b3fe226 Updated TODOs to match issues 2021-09-03 09:14:52 +02:00
Waldir Leoncio
682555f8e3 Adapted greedyMix examples (closes #15) 2021-09-03 09:10:21 +02:00
Waldir Leoncio
db760fe899 Minor changes for clean check 2021-08-23 14:34:20 +02:00
Waldir Leoncio
cabb3318dd To-do cleanup 2021-08-23 13:46:48 +02:00
Waldir Leoncio
04a66aa2c1 Several fixes to code to pass unit tests 2021-08-23 09:10:10 +02:00
Waldir Leoncio
8956949bff Refactoring and syntax fixes 2021-06-29 10:41:23 +02:00
Waldir Leoncio
6fb06da866 Commented out non-interactive test code 2021-03-31 10:39:42 +02:00
Waldir Leoncio
3d43ed856f Added test for handleData 2021-03-31 10:31:43 +02:00
Waldir Leoncio
76861c9027 Fixed BAPS format in test unit 2021-03-30 08:23:07 +02:00
Waldir Leoncio
ae58372205 Changed dataset used for testing greedyMix 2021-03-30 08:11:25 +02:00
Waldir Leoncio
edd0cac775 Added TODO 2021-02-01 09:23:45 +01:00
Waldir Leoncio
a60f6e0617 Minor changes to pass check 2020-11-09 06:57:08 +01:00
Waldir Leoncio
f886feb3a8 Translated admixture_initialization 2020-10-19 13:44:18 +02:00
Waldir Leoncio
a31fafd5de Added test for linkage() 2020-07-31 13:59:30 +02:00
Waldir Leoncio
a632a54a1d Renamed test file 2020-07-13 13:59:45 +02:00
Renamed from tests/testthat/test.greedyMix.R (Browse further)