Commit graph

629 commits

Author SHA1 Message Date
Waldir Leoncio
f81a078365 Reorganizing tests 2022-04-13 09:12:59 +02:00
Waldir Leoncio
40f2b3f07a Added test unit for handlePopData() 2022-04-13 09:12:59 +02:00
Waldir Leoncio
03db7f4124 Translated handlePopData (#2) 2022-04-13 09:12:59 +02:00
Waldir Leoncio
9224c44cb6 Merge issue-2-translate-greedyPopMix into develop 2022-04-12 14:15:09 +02:00
Waldir Leoncio
58ee8ccb92 Added unit test 2022-04-12 14:14:51 +02:00
Waldir Leoncio
c9c310d1fa Translated getPopDistancesByKL (#2) 2022-04-12 14:14:12 +02:00
Waldir Leoncio
d71bd0567a Removed translated code 2022-02-08 11:27:22 +01:00
Waldir Leoncio
e9e858c667 Merge 2-translate-greedyPopMix into develop 2022-02-08 11:23:29 +01:00
Waldir Leoncio
98cff11128 Added unit test file for greedyPopMix functions (#2) 2022-02-08 11:23:22 +01:00
Waldir Leoncio
1462f6167f Translated findOutRowsFromInd (#2)
Importing one more function from matlab2r
2022-02-08 11:23:14 +01:00
Waldir Leoncio
4a7cf802e8 Removed translated function from MATLAB script 2022-02-03 12:58:54 +01:00
Waldir Leoncio
1baa99540c Merge 2-translate-greedyPopMix into develop 2022-02-03 12:57:01 +01:00
Waldir Leoncio
8860f0159c Translated fiksaaPartitioYksiloTasolle() (#2) 2022-02-03 12:56:20 +01:00
Waldir Leoncio
cf77908604 Merge branch 'split-ci' into develop 2022-02-03 11:09:10 +01:00
Waldir Leoncio
857083a38f Moved lint and coverage CI to their own YML 2022-02-03 11:00:46 +01:00
Waldir Leoncio
9f36a3046b Renamed monolithic YML 2022-02-03 10:56:52 +01:00
Waldir Leoncio
e0b2960f1a Merge branch 'import-matlab2r' into develop 2022-02-03 10:49:59 +01:00
Waldir Leoncio
e36b656629 Updated badges 2022-02-03 10:49:48 +01:00
Waldir Leoncio
9ad4fa8c76 Resolved conflicts involving homonymous functions 2022-02-03 10:43:34 +01:00
Waldir Leoncio
b872760f81 Fixed linkage function 2022-02-03 10:29:32 +01:00
Waldir Leoncio
69ca345f11 Removed docs from matlab2r files (#21) 2022-02-03 10:10:36 +01:00
Waldir Leoncio
a381fde4bd Added rBAPS help file with matlab2r imports (#21) 2022-02-03 10:09:58 +01:00
Waldir Leoncio
a630804122 Increment version number to 0.0.0.9005 2022-02-03 09:47:27 +01:00
Waldir Leoncio
721b2527ca Merge branch 'issue-21' into develop (closes #21) 2022-01-27 12:56:19 +01:00
Waldir Leoncio
9fb8c08f72 Removed functions moved to matlab2r (#21) 2022-01-27 11:40:16 +01:00
Waldir Leoncio
54b04afe63 Merge branch 'issue-19-load-genepop' into develop 2022-01-27 11:19:18 +01:00
Waldir Leoncio
9d1e8f7ae6 Adding adegenet to imports 2022-01-27 11:19:10 +01:00
Waldir Leoncio
1832ad7a45 Increment version number to 0.0.0.9004 2022-01-27 11:16:47 +01:00
Waldir Leoncio
95ff85f021 Added read.genepop() to greedyMix() (closes #19) 2022-01-27 11:16:32 +01:00
Waldir Leoncio
c5cf0edd1d Removed unnecessary concantenations 2021-11-10 14:55:11 +01:00
Waldir Leoncio
8b0d1c3cc3 More syntax fixes 2021-11-10 14:45:06 +01:00
Waldir Leoncio
1b99104cb4 Syntax fix 2021-11-10 14:32:18 +01:00
Waldir Leoncio
eb22fbf286 Merge fix-linting into develop (closes #23) 2021-11-10 14:26:54 +01:00
Waldir Leoncio
2ff9d5ffe9 Added linting to CI workflow (#23)
Customized linting rules on CI (#23)
2021-11-10 14:26:27 +01:00
Waldir Leoncio
fca9caa731 Restyled files
Ran through styler::style_dir() in the R and tests directories in preparation for #23.
2021-11-10 14:25:50 +01:00
Waldir Leoncio
a9c7211465 Changed location of covr installation 2021-11-10 13:52:44 +01:00
Waldir Leoncio
0e01845876 Installing covr on CI machines 2021-11-10 13:43:21 +01:00
Waldir Leoncio
ae23090a0e Added Codecov to CI workflow 2021-11-10 13:36:47 +01:00
Waldir Leoncio
37265685de Added codecov badge 2021-11-10 13:29:29 +01:00
Waldir Leoncio
ced8b0f7f7 Merge issue-20-fix-CI into develop (closes #20) 2021-11-10 12:46:27 +01:00
Waldir Leoncio
aec2049a33 Explicitly installing GenomicRanges 2021-11-10 12:24:00 +01:00
Waldir Leoncio
0f004a13ba Merge branch 'develop' into issue-20-fix-CI 2021-11-10 12:15:09 +01:00
Waldir Leoncio
c15392b7e0 Updated docs, ignored folder 2021-10-11 14:26:07 +02:00
Waldir Leoncio
ee4d35ee85 Fixup to apt command on ad2ef0e 2021-10-11 14:00:00 +02:00
Waldir Leoncio
ad2ef0e789 Installing libcurl on Ubuntu VM 2021-10-11 13:57:03 +02:00
Waldir Leoncio
205d298a6e Opening CI for all branches
Particularly useful for temporary branches like this one, that should be squashed and merged once CI is fixed.
2021-10-11 13:27:29 +02:00
Waldir Leoncio
8206353dfe Merge branch 'fix-ci' into develop 2021-09-03 13:31:24 +02:00
Waldir Leoncio
e7bf9f7b85 Adding BiocManager to CI
Explicitly installing Bioc dependency. This inelegance should be fixed ASAP.
2021-09-03 13:30:44 +02:00
Waldir Leoncio
2b70817317 Improved handling of data input on greedyMix 2021-09-03 13:08:40 +02:00
Waldir Leoncio
4d5539c402 Improved user feedback 2021-09-03 12:58:04 +02:00