Commit graph

360 commits

Author SHA1 Message Date
Waldir Leoncio
2ada115bf3 Merge branch 'fix-check' into develop 2021-08-23 14:34:33 +02:00
Waldir Leoncio
db760fe899 Minor changes for clean check 2021-08-23 14:34:20 +02:00
Waldir Leoncio
cabb3318dd To-do cleanup 2021-08-23 13:46:48 +02:00
Waldir Leoncio
621ffdaf87 Merge branch 'fix-tests' into develop 2021-08-23 09:10:21 +02:00
Waldir Leoncio
04a66aa2c1 Several fixes to code to pass unit tests 2021-08-23 09:10:10 +02:00
Waldir Leoncio
ff56213120 Increment version number 2021-08-23 07:58:51 +02:00
Waldir Leoncio
6a124ac3ce Improved documentation of load_fasta (#16) 2021-08-23 06:47:08 +02:00
Waldir Leoncio
1a3bdd973e Merge branch 'issue-16' into develop
Basic replacement. Still needs diploid development.
2021-08-23 06:42:41 +02:00
Waldir Leoncio
cafd194880 Replaced greedyMix() with a stop message 2021-08-23 06:40:49 +02:00
Gerry Tonkin-Hill
50ec8618cc Added load_fasta from rhierbaps 2021-08-23 06:32:46 +02:00
Waldir Leoncio
8956949bff Refactoring and syntax fixes 2021-06-29 10:41:23 +02:00
Waldir Leoncio
829bcc447e Merge branch 'issue-13' into develop 2021-06-29 10:38:07 +02:00
Waldir Leoncio
7c2e4c431f Reformatting output 2021-06-29 10:37:52 +02:00
Waldir Leoncio
67170d1c7b Refactoring 2021-06-29 10:37:42 +02:00
Waldir Leoncio
f37f8d67c8
Added recommendation to use the original BAPS 2021-06-25 07:54:23 +02:00
Waldir Leoncio
185d71fa25
Fixed name of development branch (#14) 2021-06-25 07:49:47 +02:00
Waldir Leoncio
c975a7c820 Removed duplicated function 2021-05-20 09:18:33 +02:00
Waldir Leoncio
4520fd30fb Fixed syntax 2021-05-20 09:18:05 +02:00
Waldir Leoncio
8eb81c51d2 Swapped argument order to match MATLAB 2021-05-20 09:17:08 +02:00
Waldir Leoncio
3fd1cac27b Merge work on greedyMix into develop 2021-03-31 10:40:29 +02:00
Waldir Leoncio
b35053fd3a Increment version number 2021-03-31 10:40:15 +02:00
Waldir Leoncio
6fb06da866 Commented out non-interactive test code 2021-03-31 10:39:42 +02:00
Waldir Leoncio
39145ee865 Updated docs 2021-03-31 10:39:15 +02:00
Waldir Leoncio
3f9bb0b9bd Merge branch 'fix-handleData' into issue-2-greedy-test 2021-03-31 10:32:14 +02:00
Waldir Leoncio
3d43ed856f Added test for handleData 2021-03-31 10:31:43 +02:00
Waldir Leoncio
aec2f40c2c Syntax fixes 2021-03-31 10:31:14 +02:00
Waldir Leoncio
4d9ed9210f Added sorting of output on find() 2021-03-31 10:27:45 +02:00
Waldir Leoncio
e1642f24e5 Added list output to cell() 2021-03-31 10:26:56 +02:00
Waldir Leoncio
d16de2ba7d Uncommented translated functions 2021-03-30 08:34:41 +02:00
Waldir Leoncio
ef540baf7e Reformatting BAPS input 2021-03-30 08:34:31 +02:00
Waldir Leoncio
2bb94b815c Merge branch 'baps-file' into issue-2-greedy-test 2021-03-30 08:23:44 +02:00
Waldir Leoncio
c7720f33b4 Fixed output formatting 2021-03-30 08:23:37 +02:00
Waldir Leoncio
231e0ff501 Fixed syntax 2021-03-30 08:23:21 +02:00
Waldir Leoncio
76861c9027 Fixed BAPS format in test unit 2021-03-30 08:23:07 +02:00
Waldir Leoncio
f70277cd6a Fixed delimiter for BAPS-formatted file 2021-03-30 08:22:24 +02:00
Waldir Leoncio
ae58372205 Changed dataset used for testing greedyMix 2021-03-30 08:11:25 +02:00
Waldir Leoncio
4a7eef74bc Refactoring 2021-02-15 11:31:04 +01:00
Waldir Leoncio
f243ee0466 Added missing { 2021-02-15 10:16:33 +01:00
Waldir Leoncio
55cbadb471 Replaced rowSums with colSums to match MATLAB sum 2021-02-15 10:15:25 +01:00
Waldir Leoncio
85b7fe1533 Changed assignment operator 2021-02-15 10:05:31 +01:00
Waldir Leoncio
a13e2c30ac Improved printing 2021-02-15 10:04:58 +01:00
Waldir Leoncio
d3c390a5f8 Syntax fix 2021-02-15 10:04:27 +01:00
Waldir Leoncio
75ff42daed Fixed syntax 2021-02-15 09:49:21 +01:00
Waldir Leoncio
1b5d97a041 Improved handling of 0-dim on repmat 2021-02-15 09:03:44 +01:00
Waldir Leoncio
4bb450c6c1 Fixed bugs in laskeMuutokset() 2021-02-15 09:03:28 +01:00
Waldir Leoncio
62255fcb40 Added TODOs 2021-02-01 10:01:40 +01:00
Waldir Leoncio
44210e9737 Changed global definitions 2021-02-01 10:01:25 +01:00
Waldir Leoncio
58bf940ae3 Improved printing 2021-02-01 10:01:14 +01:00
Waldir Leoncio
aa8a066530 Improved array dropping 2021-02-01 10:01:02 +01:00
Waldir Leoncio
edd0cac775 Added TODO 2021-02-01 09:23:45 +01:00